View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6042_low_10 (Length: 251)

Name: NF6042_low_10
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6042_low_10
NF6042_low_10
[»] chr7 (18 HSPs)
chr7 (5-241)||(26204118-26204354)
chr7 (1-241)||(26223752-26223992)
chr7 (19-141)||(26191503-26191625)
chr7 (12-141)||(19103334-19103463)
chr7 (12-153)||(26179314-26179455)
chr7 (31-162)||(26155453-26155584)
chr7 (35-146)||(26088036-26088147)
chr7 (35-146)||(26111824-26111935)
chr7 (31-162)||(26128817-26128948)
chr7 (31-141)||(26242647-26242757)
chr7 (12-162)||(26297676-26297826)
chr7 (38-138)||(26302059-26302159)
chr7 (12-139)||(26186473-26186600)
chr7 (31-138)||(26251095-26251202)
chr7 (19-150)||(26227234-26227365)
chr7 (19-150)||(26207673-26207804)
chr7 (174-240)||(26302211-26302277)
chr7 (199-240)||(26297875-26297916)
[»] chr4 (1 HSPs)
chr4 (12-139)||(44903481-44903608)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 26204118 - 26204354
Alignment:
Q  5 tttggtgcaatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaa 104  Q
    |||||||||||||||||||| |||  |||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26204118 tttggtgcaatgtttgaatcagagaaaagaagctttggaacactatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaactacaa 26204217  T
Q  105 tagggatcaaatcttggagtataggaccagtttcagcatggattaacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaatt 204  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204218 tagggatcaaatcttggagtataggaccggtttcagcatggattaacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaatt 26204317  T
Q  205 ggtaaattggcttaattctaaggaaaatgagtctgtg 241  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26204318 ggtaaattggcttaattctaaggaaaacgagtctgtg 26204354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26223752 - 26223992
Alignment:
Q  1 tgcttttggtgcaatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaact 100  Q
    |||||||||||||||||||||||| |||  |||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26223752 tgcttttggtgcaatgtttgaatcagagaaaagaagctttggaacactatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaact 26223851  T
Q  101 acaatagggatcaaatcttggagtataggaccagtttcagcatggattaacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaag 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26223852 acaatagggatcaaatcttggagtataggaccggtttcagcatggattaacaaagacgatgataaaggatacacagaaaagaacattggaaaagatcaag 26223951  T
Q  201 aattggtaaattggcttaattctaaggaaaatgagtctgtg 241  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  26223952 aattggtaaattggcttaattctaaggaaaacgagtctgtg 26223992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 26191503 - 26191625
Alignment:
Q  19 tgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatct 118  Q
    |||||| |||| || ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |||||||  ||||||||||||    
T  26191503 tgaatcagaggaaaaaagctatggcacactatacaatagttttcatgaactagaaagtgaatatgagaaactttgtaatactacaagggggatcaaatct 26191602  T
Q  119 tggagtataggaccagtttcagc 141  Q
    |||||| ||||||||||||||||    
T  26191603 tggagtgtaggaccagtttcagc 26191625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 19103463 - 19103334
Alignment:
Q  12 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 111  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||||| ||||||| |||||||||||||  ||||||||||| |||||| | |||||    
T  19103463 caatgtttgaatcagagaaaagaagttatggaacactatacaatagttttcatgaactggaaagtgattatgtaaaacttggtaagactacattggggat 19103364  T
Q  112 caaatcttggagtataggaccagtttcagc 141  Q
    |||||||||| || ||||||||||||||||    
T  19103363 caaatcttggtgtgtaggaccagtttcagc 19103334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 26179314 - 26179455
Alignment:
Q  12 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 111  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| |  |||| |||||||| |||||    
T  26179314 caatgtttgaatcagagaaaagaagttatggaacactatacaatagttttcatgaacttgaaagtgattatgaaaaattaagtaacactacaatggggat 26179413  T
Q  112 caaatcttggagtataggaccagtttcagcatggattaacaa 153  Q
    |||| |||||||| |||||||||||||||| |||| ||||||    
T  26179414 caaaacttggagtgtaggaccagtttcagcttggactaacaa 26179455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 26155453 - 26155584
Alignment:
Q  31 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 130  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| |||| ||||| || ||||||||| |||||||| |||||    
T  26155453 aagaagttatggaacactatacaatagttttcatgaactggaaagtgattatgaaaaacttagtaacactaccatggggatcaaaacttggagtgtagga 26155552  T
Q  131 ccagtttcagcatggattaacaaagacgatga 162  Q
    ||||||||| |||||  |||||| || |||||    
T  26155553 ccagtttcatcatgggctaacaaggatgatga 26155584  T

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Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 26088036 - 26088147
Alignment:
Q  35 agttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccag 134  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| |  |||||||| |||||||||||||||||| |||| ||||    
T  26088036 agttatggaacactatacaatagttttcatgaactggaaagtgattatgaaaaacttggaagcactacaatggggatcaaatcttggagtgtagggccag 26088135  T
Q  135 tttcagcatgga 146  Q
    ||||||| ||||    
T  26088136 tttcagcttgga 26088147  T

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Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 26111824 - 26111935
Alignment:
Q  35 agttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccag 134  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| |  |||||||| |||||||||||||||||| |||| ||||    
T  26111824 agttatggaacactatacaatagttttcatgaactggaaagtgattatgaaaaacttggaagcactacaatggggatcaaatcttggagtgtagggccag 26111923  T
Q  135 tttcagcatgga 146  Q
    ||||||| ||||    
T  26111924 tttcagcttgga 26111935  T

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Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 26128817 - 26128948
Alignment:
Q  31 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 130  Q
    |||||||||||| ||||||| |||||||||| ||||||| |||||||||||||| ||  || |||| |||||  | |||||||||||||||||| |||||    
T  26128817 aagaagttatggaacactatgcaatagttttcatgaactggaaagtgattatgaaaacatttgtaacactaccttggggatcaaatcttggagtgtagga 26128916  T
Q  131 ccagtttcagcatggattaacaaagacgatga 162  Q
    ||||||||| |||||  |||||| || |||||    
T  26128917 ccagtttcatcatgggctaacaaggatgatga 26128948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 26242647 - 26242757
Alignment:
Q  31 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 130  Q
    |||||| |||||  |||||||||| |||||| ||||||| ||||||||||||||||| ||| ||||||||||||| || |||||||| |||||| | |||    
T  26242647 aagaagctatgggtcactatacaacagttttcatgaacttgaaagtgattatgagaatcttagtaaaactacaatcggaatcaaatcatggagtgtcgga 26242746  T
Q  131 ccagtttcagc 141  Q
    |||||||||||    
T  26242747 ccagtttcagc 26242757  T

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Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 26297676 - 26297826
Alignment:
Q  12 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 111  Q
    |||||| |||||| | || |||||| |||||  |||||||||| |||||| ||||||| |||||||||||||||||||||  |||||||||||| || ||    
T  26297676 caatgtatgaatcagcggaaagaagctatgggtcactatacaacagttttcatgaacttgaaagtgattatgagaaactttttaaaactacaatcggaat 26297775  T
Q  112 caaatcttggagtataggaccagtttcagcatggattaacaaagacgatga 162  Q
    ||| || |||||| | |||||||||||||| |||  |||||| || |||||    
T  26297776 caagtcatggagtgtcggaccagtttcagcctgggctaacaaggatgatga 26297826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 26302059 - 26302159
Alignment:
Q  38 tatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagttt 137  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||| || |||| ||||| || ||||||||||||| | ||||||||||||    
T  26302059 tatggaacactatacaatagttttcatgaacttgaaagtgattatgtgaaacttagtcaaacaacaatgggaatcaaatcttggaatgtaggaccagttt 26302158  T
Q  138 c 138  Q
    |    
T  26302159 c 26302159  T

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Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 26186473 - 26186600
Alignment:
Q  12 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 111  Q
    |||| |||||||| |||  || |||||| || |||||||||||||||||| ||||||| || ||||||||| | |||||| |||| ||||   | |||||    
T  26186473 caatttttgaatcagagaaaaaaagttacggaacactatacaatagttttcatgaactggagagtgattataaaaaacttagtaacactatcttggggat 26186572  T
Q  112 caaatcttggagtataggaccagtttca 139  Q
    |||||| |||||| ||||||||||||||    
T  26186573 caaatcatggagtgtaggaccagtttca 26186600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 26251095 - 26251202
Alignment:
Q  31 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 130  Q
    |||||| |||||  |||||||||| |||||| ||||||| |||| |||||| ||||| ||| |||||| |||||| || |||||||| |||||| | |||    
T  26251095 aagaagctatgggtcactatacaacagttttcatgaacttgaaaatgattacgagaagctttgtaaaagtacaattggaatcaaatcatggagtgtcgga 26251194  T
Q  131 ccagtttc 138  Q
    ||||||||    
T  26251195 ccagtttc 26251202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 26227234 - 26227365
Alignment:
Q  19 tgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatct 118  Q
    |||||| ||||||| ||||||||| ||  ||| |||||| ||| | ||||| ||| ||||||||||||| |||   || |  ||||| ||||||||| |     
T  26227234 tgaatcagagggaaaaagttatggaactttatgcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagca 26227333  T
Q  119 tggagtataggaccagtttcagcatggattaa 150  Q
    |||||| |||||||||||||||||||| ||||    
T  26227334 tggagtgtaggaccagtttcagcatggcttaa 26227365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 26207673 - 26207804
Alignment:
Q  19 tgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatct 118  Q
    |||||| ||||||||||| ||||| || |||  |||||| ||| | ||||| ||| ||||||||||||| |||   || |  ||||| ||||||||| |     
T  26207673 tgaatcggagggaagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagca 26207772  T
Q  119 tggagtataggaccagtttcagcatggattaa 150  Q
    |||||  |||||||||||||||||||| ||||    
T  26207773 tggagcgtaggaccagtttcagcatgggttaa 26207804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 26302211 - 26302277
Alignment:
Q  174 cggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgt 240  Q
    |||| |||||| ||||||||||   ||||||||||||||||||||| || ||| |||||||||||||    
T  26302211 cggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgt 26302277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 26297875 - 26297916
Alignment:
Q  199 agaattggtaaattggcttaattctaaggaaaatgagtctgt 240  Q
    ||||||| |||||||||||||||| ||||||||||| |||||    
T  26297875 agaattgctaaattggcttaattcgaaggaaaatgaatctgt 26297916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 44903481 - 44903608
Alignment:
Q  12 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 111  Q
    |||| |||||||| |||| |||||||||||| ||| ||| |||||||||| ||||||| |||||||||||||||||| || ||||||||||||| |||||    
T  44903481 caatttttgaatcggaggcaagaagttatgggacaatatgcaatagttttcatgaacttgaaagtgattatgagaaagttagtaaaactacaatggggat 44903580  T
Q  112 caaatcttggagtataggaccagtttca 139  Q
     || ||||||||| ||||||||||||||    
T  44903581 taagtcttggagtgtaggaccagtttca 44903608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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