View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6042_low_9 (Length: 251)
Name: NF6042_low_9
Description: NF6042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6042_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 9668540 - 9668376
Alignment:
| Q |
1 |
aagttctacactctaacaattttttatccctcaagaaagaaacatttagagtagactatagaaactaagcattgttcctcgacacttacagttcatgtgg |
100 |
Q |
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| T |
9668540 |
aagttctatactctaacaatcttttatccctcaagaaagaaacattcagagtaaactctagaaactaagcattgttcctcgacacttacagttcttgtgg |
9668441 |
T |
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| Q |
101 |
caaattcttcatcaaaggctatcaataatcaaagaggttgaaagggatcaaacttgcgaaggaac |
165 |
Q |
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| T |
9668440 |
cagattcttcatcaaaggctatcaataatcgaagaggttgaaagggatcaaacttgcgaaggaac |
9668376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 9668376 - 9668333
Alignment:
| Q |
193 |
ccaactctttgaatctcattacattcatcattggtctagaaaag |
236 |
Q |
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| T |
9668376 |
ccaactctttgaatctcattacattcatcattggtctagaaaag |
9668333 |
T |
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