View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6043_high_5 (Length: 332)
Name: NF6043_high_5
Description: NF6043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6043_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 61 - 257
Target Start/End: Original strand, 42860361 - 42860557
Alignment:
| Q |
61 |
aagttgctatttgtttgtttaaccatttaatcagtttaaattttgatttagactttgattcaacgtattttacagtggtatttacgacttgcttaacaac |
160 |
Q |
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| T |
42860361 |
aagttgctatttgtttgtttaaccatttaatcagtttaaattttgatttagactttgattcaacgtattttacagtggtatttacgacttgcttgacaac |
42860460 |
T |
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| Q |
161 |
attgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtcaaagttattgattaggatcactgcag |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42860461 |
attgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgattaggatcactgcag |
42860557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 114 - 322
Target Start/End: Original strand, 42856347 - 42856553
Alignment:
| Q |
114 |
tttgattcaacgtattttacagtggtatttacgacttgcttaacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaac |
213 |
Q |
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| T |
42856347 |
tttgattcaacgtattttacagtggtatttacgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaac |
42856446 |
T |
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| Q |
214 |
attcaaggccattctgtcaaagttattgattaggatcactgcagnnnnnnnnnnnnnnncattgagtcaattacattactctttgcctattattgttcca |
313 |
Q |
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| T |
42856447 |
ttgcaaggccattctgtcaaagttattgattaggatcactgcag--tatatatatatatcattgagtcaattacattactctttgcctattattgttcca |
42856544 |
T |
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| Q |
314 |
cctcctttg |
322 |
Q |
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||||||||| |
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| T |
42856545 |
cctcctttg |
42856553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 42848198 - 42848293
Alignment:
| Q |
162 |
ttgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtcaaagttattgattaggatcactgcag |
257 |
Q |
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| T |
42848198 |
ttgaggcacatttctttgtcttccgctatatagttattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcag |
42848293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 42854725 - 42854849
Alignment:
| Q |
133 |
cagtggtatttacgacttgcttaacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtca |
232 |
Q |
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| T |
42854725 |
cagtggtatttgtgacttgcttgacaacattgaggtccgtttctgcatcttccgctatatagatattgcttaacttagaacttgtgaggccattctatca |
42854824 |
T |
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| Q |
233 |
aagttattgattaggatcactgcag |
257 |
Q |
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| T |
42854825 |
aagttattgattaggatcactgcag |
42854849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 42852842 - 42852946
Alignment:
| Q |
145 |
cgacttgcttaacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtcaaagttattgatt |
244 |
Q |
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|||||||||| || |||||||||||||||||||| ||| | ||| ||||||||||||||| |||||||| | | |||||||| ||||||||||||||| |
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| T |
42852842 |
cgacttgcttgacgacattgagacacatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatt |
42852941 |
T |
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| Q |
245 |
aggat |
249 |
Q |
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|||| |
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| T |
42852942 |
tggat |
42852946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 42860581 - 42860630
Alignment:
| Q |
273 |
cattgagtcaattacattactctttgcctattattgttccacctcctttg |
322 |
Q |
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| T |
42860581 |
cattgagtcaattacaatactctttgcctattattgttccacctcctttg |
42860630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 21765131 - 21765253
Alignment:
| Q |
21 |
acgagataggatgtgagttactatttggtttattttagggaagttgctatttgtttgtttaaccatttaatcagtttaaattttgatttagactttgatt |
120 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |
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| T |
21765131 |
acgagatgggatgtaagttactatttggtttattttagggaagttgctatttgtttgtttaactatttaattagttttaattttgatttagactttgatt |
21765230 |
T |
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| Q |
121 |
caacgtattttacagtggtattt |
143 |
Q |
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|||| ||||||||| |||||||| |
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| T |
21765231 |
caacatattttacaatggtattt |
21765253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 21765260 - 21765296
Alignment:
| Q |
97 |
taaattttgatttagactttgattcaacgtattttac |
133 |
Q |
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| T |
21765260 |
taaattttgattttgactttgattcagcgtattttac |
21765296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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