View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6043_high_8 (Length: 267)
Name: NF6043_high_8
Description: NF6043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6043_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 824225 - 824470
Alignment:
| Q |
7 |
caaaaccctaaccaacagcagcagcagcgcagatggatactatcagcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaa |
106 |
Q |
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| T |
824225 |
caaaaccctaaccaacagcagtagcagcgcagatggatactatcagcaatttacctgacgatatcctctgccacattctctcttttgttcccaccaaaaa |
824324 |
T |
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| Q |
107 |
accagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagagcata |
206 |
Q |
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| T |
824325 |
accagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagagcata |
824424 |
T |
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| Q |
207 |
tatgaatcaatgttcatgctcttattttatgtggaaagcattttct |
252 |
Q |
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| T |
824425 |
tatgaatcaatgttcatgctcttattttatgtggaaagcattttct |
824470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 990989 - 990870
Alignment:
| Q |
48 |
atcagcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatc |
147 |
Q |
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| T |
990989 |
atcagcagtttgcccgacgaaatccttttccgcattctctcatttgtatccacaaaagaagcagttgctacaagcgttttgtccaagaggtggactaatc |
990890 |
T |
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| Q |
148 |
tatggcactatgttcccaat |
167 |
Q |
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| T |
990889 |
tctggcattatcttcccaat |
990870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 1013181 - 1013092
Alignment:
| Q |
80 |
cattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatct |
169 |
Q |
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| T |
1013181 |
cattctctcttttctcacaaccaaagaatcagttgcaacaagcattctatcaaagagatggattcacctatggcatcatgttcccaatct |
1013092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 35766297 - 35766399
Alignment:
| Q |
51 |
agcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctat |
150 |
Q |
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| T |
35766297 |
agcagtttaccagacgatgttctttgccacattctctcttttgtctccacccaagaggccgttgccacaagcgttttgtccaagagatggactcatcttt |
35766396 |
T |
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| Q |
151 |
ggc |
153 |
Q |
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||| |
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| T |
35766397 |
ggc |
35766399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 22054516 - 22054600
Alignment:
| Q |
79 |
gcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcc |
163 |
Q |
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| T |
22054516 |
gcattctctctttacttacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcc |
22054600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 40639890 - 40639961
Alignment:
| Q |
99 |
accaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctc |
170 |
Q |
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| T |
40639890 |
accaaagaatcagttgcaacaagcattctttcaaagagatggattcatctatggcaccatgttcctaatctc |
40639961 |
T |
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