View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6043_low_1 (Length: 789)
Name: NF6043_low_1
Description: NF6043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6043_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 23909285 - 23908731
Alignment:
| Q |
19 |
aatgacaacactattgctaatgcctactcctatcctaatgggaaggtaatggtatttacaggtttgcttgagcttttaaccagtgatgatttagcgactc |
118 |
Q |
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| T |
23909285 |
aatgacaacactattgctaatgcctactcctatcctaatgggaaggtaatggtatttacaggtttgcttgagcttttaaccagtgatgacttagcgactc |
23909186 |
T |
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| Q |
119 |
ttattgcacatgaggtattggattgatttgtttaactcattaatacaactttttggattgacttaattaaatttatctacttctataagcacttatgaga |
218 |
Q |
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| T |
23909185 |
ttattgcacatgaggtattggattgatttgtttaactcattaatacaactttttggattgacttaattaaatttatctacttctataagcacttatgaga |
23909086 |
T |
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| Q |
219 |
ctgattgatagagattctagaaagaatgtatgacatttgaataagttgtttggatagcttattttagaaaacacttaattaagttatgtattcaaacaag |
318 |
Q |
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| T |
23909085 |
ctgattgatagagattctagaaagaatgtatgacatttgaataagttgtttggatagtttattttagaaaacacttaattaagttatgtattcaaacaag |
23908986 |
T |
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| Q |
319 |
gccgctatatatttctgcattttaatatatttaagacataaatctaacatttttcagcttgataattaggttggacatactgttgctagacatgcagctg |
418 |
Q |
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| T |
23908985 |
gccgctatatatttctgcattttaatatatttaagacataaatctaacatttttcagcttgataattaggttggacatactgttgctagacatgcagctg |
23908886 |
T |
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| Q |
419 |
agggccagacaaactatatgttttttatcattcaacaactgatattacttcctttcgtctcttttccgtctcttattgtcaacttaatagcagcgcgttc |
518 |
Q |
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| T |
23908885 |
aggaccagacagactatatgttttttatcatccaacaattgatattacttcctttcatctcttttccgtctcttattgtcaacttaatagcagcgcgttc |
23908786 |
T |
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| Q |
519 |
cataagtcttcttttctcgagacggtaatgattccttccttatctacttgattaa |
573 |
Q |
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| T |
23908785 |
cataatgcttcttttctcgagacggtaatgattccttccttatctacttaattaa |
23908731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 485 - 776
Target Start/End: Complemental strand, 23908708 - 23908418
Alignment:
| Q |
485 |
cgtctcttattgtcaacttaatagcagcgcgttccataagtcttcttttctcgagacggtaatgattccttccttatctacttgattaaaatggtttcaa |
584 |
Q |
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| T |
23908708 |
cgtctcttattgtcaacttaatagcagcgcgttccataatgcttcttttctcgagacggtaatgattccttccttatctacttgattaaaatggtttcaa |
23908609 |
T |
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| Q |
585 |
ataatctgatctgggaattttcatccgtnnnnnnnggcattcattatgtgacctttcatgaggcattcgatagcaaacaattgccaaatgcttgacagtt |
684 |
Q |
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| T |
23908608 |
ataatctgatctgggaattttcatccgtaaaaaaaggcattcattatgtgacctttcatgaggcatttgatagcaaacaatttccaaatgcttgacagtt |
23908509 |
T |
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| Q |
685 |
gacatctttcagagacatctttgatagcatatagaatcgtataacattttgtacagaacttatatgataatttgtgtcaaaatcaagatatt |
776 |
Q |
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| T |
23908508 |
gacatctttcagagacatctttgatagcatatagaatcgtataacattttgtacagaa-tattatgataatttgtgtcaaaatcaagatatt |
23908418 |
T |
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