View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6043_low_10 (Length: 248)
Name: NF6043_low_10
Description: NF6043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6043_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 14773981 - 14773751
Alignment:
| Q |
5 |
ttgtgacagtgaaatacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgttggcatttatttcttccaatt |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14773981 |
ttgtgacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgttttggcatttatttcttccaatt |
14773882 |
T |
|
| Q |
105 |
catgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctt |
204 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14773881 |
catgattcatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaacaaggagtctt |
14773782 |
T |
|
| Q |
205 |
tggcctcatgtgacattgcagtttttattcat |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |
|
|
| T |
14773781 |
tggcctcatgtgaca-tgcagtttttgttcat |
14773751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 17881248 - 17881023
Alignment:
| Q |
6 |
tgtgacagtgaaatacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgt-tggcatttatttcttccaatt |
104 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||| | | | | | ||| |||||||||| |
|
|
| T |
17881248 |
tgtgacagagaaagacatttcatttctttcgccttttcctgcaccaaagtcttcatttgatgtattcattttgtatatattggaattacatcttccaatt |
17881149 |
T |
|
| Q |
105 |
catgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctt |
204 |
Q |
| |
|
|| | || ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
17881148 |
cacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggtggagtcacaaagctgctagccaataaggagtctt |
17881049 |
T |
|
| Q |
205 |
tggcctcatgtgacattgcagttttt |
230 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
17881048 |
tggcctcatgtgacattgcggttttt |
17881023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 15015727 - 15015513
Alignment:
| Q |
24 |
ttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtg--tgttggcatttatttcttccaattcatgatttatcgtttta |
121 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||| | ||| | |||| ||||||||||||| |||| | |||| |
|
|
| T |
15015727 |
ttcagttctttcaacttttctcacaccaaagtcttcatttgatgtattcattttgtacatattgatacttatatcttccaattcattgtttaccattttg |
15015628 |
T |
|
| Q |
122 |
tttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcctcatgtgacatt |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||| ||||||| || | |||||||||| ||| ||||||||||||| |
|
|
| T |
15015627 |
tttgtaggaaaacaaaaaatatattgtgctgagagagatttctgaaggtggagttacaaagctgctagcaaacaaggagtctctgggctcatgtgacatt |
15015528 |
T |
|
| Q |
222 |
gcagtttttattcat |
236 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
15015527 |
gcagtttttgttcat |
15015513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 15048403 - 15048256
Alignment:
| Q |
83 |
ttggcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagag |
182 |
Q |
| |
|
||||||||||| ||||||| |||| | || ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| || |
|
|
| T |
15048403 |
ttggcatttatatcttccagttcacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggaggagtcacaaag |
15048304 |
T |
|
| Q |
183 |
ctgctggccaccaaggagtctttggcctcatgtgacattgcagttttt |
230 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
15048303 |
ctgctagccaataagaagtctttggcctcatgtgacattgcaattttt |
15048256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 54159114 - 54158976
Alignment:
| Q |
86 |
gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctg |
185 |
Q |
| |
|
|||||| ||||||| ||| ||| |||||| |||| |||| ||| ||| || |||||||||||| ||||||||||| ||||| |||||| | || |||| |
|
|
| T |
54159114 |
gcatttctttcttcatatttatgttttatcattttgtttgcagggaaagaagaaatatcttgtgctgagagagattcctgaagatggagttaaagggctg |
54159015 |
T |
|
| Q |
186 |
ctggccaccaaggagtctttggcctcatgtgacattgca |
224 |
Q |
| |
|
||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
54159014 |
ctggcgaataaggagtctttggcctcttgtgacattgca |
54158976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 53868220 - 53868339
Alignment:
| Q |
110 |
tttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcc |
209 |
Q |
| |
|
|||||| |||| |||| ||| |||||| |||||||||||| ||||||| ||| ||||| |||||| | |||||||||||| | || ||||||||||| |
|
|
| T |
53868220 |
tttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcc |
53868319 |
T |
|
| Q |
210 |
tcatgtgacattgcagtttt |
229 |
Q |
| |
|
|| |||||| |||||||||| |
|
|
| T |
53868320 |
tcttgtgacgttgcagtttt |
53868339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 51366025 - 51365876
Alignment:
| Q |
86 |
gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcac-agagct |
184 |
Q |
| |
|
|||||| ||||||| | |||||| |||||| || | ||| ||| |||||| |||||||||||||||| ||||||| |||| |||||||| ||| || |
|
|
| T |
51366025 |
gcatttctttcttcaagttcatgttttatcatt--agttgcagggaaacaagaaatatcttgtgttgaaagagattcatgaagatggagtcaagagaact |
51365928 |
T |
|
| Q |
185 |
gctggccaccaaggagtctttggcctcatgtgacattgcagtttttattcat |
236 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
51365927 |
gctggctaataaggagtctttggcctcttgtgacattgccatttttgttcat |
51365876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 36876445 - 36876575
Alignment:
| Q |
101 |
aattcatgattt-atcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaagga |
199 |
Q |
| |
|
|||||||||||| || ||||| |||| ||||||||| ||||||||| ||||||| ||||||| | ||| ||| ||| || ||| ||||| |||||| |
|
|
| T |
36876445 |
aattcatgattttattgttttgtttgcaggaaaacagaaaatatctcgtgttgaaagagattccagaaggtgaagttgcaagactggtggccgacaagga |
36876544 |
T |
|
| Q |
200 |
gtctttggcctcatgtgacattgcagttttt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36876545 |
gtctttggcctcatgtgacattgcagttttt |
36876575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University