View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6043_low_2 (Length: 742)

Name: NF6043_low_2
Description: NF6043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6043_low_2
NF6043_low_2
[»] chr5 (7 HSPs)
chr5 (18-471)||(16954163-16954615)
chr5 (478-742)||(16954909-16955176)
chr5 (478-547)||(35968764-35968835)
chr5 (490-542)||(6629391-6629444)
chr5 (485-545)||(10044719-10044781)
chr5 (478-545)||(25111143-25111212)
chr5 (478-545)||(25170234-25170303)
[»] chr2 (2 HSPs)
chr2 (485-554)||(7931481-7931552)
chr2 (478-545)||(24356155-24356224)
[»] chr3 (1 HSPs)
chr3 (485-545)||(53051077-53051139)
[»] chr8 (3 HSPs)
chr8 (478-545)||(28791352-28791421)
chr8 (490-556)||(10728907-10728973)
chr8 (478-545)||(41726565-41726634)
[»] chr7 (4 HSPs)
chr7 (478-541)||(24288467-24288532)
chr7 (478-545)||(45218152-45218221)
chr7 (478-544)||(43007938-43008006)
chr7 (478-545)||(30659474-30659543)
[»] chr1 (2 HSPs)
chr1 (478-547)||(12267624-12267695)
chr1 (478-520)||(16956587-16956629)
[»] chr4 (2 HSPs)
chr4 (479-545)||(44633201-44633269)
chr4 (478-552)||(10099713-10099788)
[»] scaffold0262 (1 HSPs)
scaffold0262 (478-536)||(12439-12499)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 16954163 - 16954615
Alignment:
Q  18 ggcagtggatgtgtgagggtgggagtggaaaccagttttgaagagatgggcatggaggatttgagtttgagaaggggaagagagattggagcatgctttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16954163 ggcagtggatgtgtgagggtgggagtggaaaccagttttgaagagatgggcatggaggatttgagtttgagaaggggaagagagattggagcatgctttg 16954262  T
Q  118 aggagaatggggaaggtgaaggtgttaggggtgggggaggaagagtggaggtgtgaatataggttaagcgcttctttgtataaaccatttgctactagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16954263 aggagaatggggaaggtgaaggtgttaggggtgggggaggaagagtggaggtgtgaatataggttaagcgcttctttgtataaaccatttgctactagtt 16954362  T
Q  218 ttgttactgttatgtcactcttcatggaaagttactctacaatttttggtcatctcatgttatgtcattctcagttgtattctcctaaccttgtttgtct 317  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  16954363 ttgttactgttatgtcactcttcatggaaggttactctacaatttttggtcatctcatgttatgtcattttcagttgtattctcctaaccttgtttgtgt 16954462  T
Q  318 tgcgcttgtgtttgtagtgttcaccaaatgaatcatcaacgtgaacaatttcacacccttagctgtgtaacnnnnnnnncctaaggcaatctcatttatc 417  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  16954463 tgcgcttgtgtttgtagtgttcaccaaatgaatcatcaaggtgaacaatttcacacccttagctgtgtaactttttttt-ctaaggcaatctcatttatc 16954561  T
Q  418 ttattttatactccctccgtcccaatttaactgacttacgtgtaataaaatatt 471  Q
    || |||| || || ||||||| |  ||||||||||| |  ||||| ||||||||    
T  16954562 ttgttttgtattcgctccgtctccgtttaactgactcatttgtaaaaaaatatt 16954615  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 478 - 742
Target Start/End: Original strand, 16954909 - 16955176
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaac-tatttttcttttctctcttttcttaacaaaacacacat 574  Q
    ||||||||||| |||||| ||||| |||||||||| |||||| ||| ||  |||||||||  |||||||||||||||||||| ||||||||| |||||||    
T  16954909 attctattttacatttatgataaa-aagaatgcaccaatactcgaagaagacactcaaaaagtatttttcttttctctctttccttaacaaa-cacacat 16955006  T
Q  575 cgtttggcgccatgacgataagtggagccaaaattttcgagttggtcatcgtaaatggaataggtgcttcct--nnnnnnnnnnnnnnnaaacgagattt 672  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||                 |||||||||||    
T  16955007 cgtttcgcgccatgacgataagtggagccaaaatttcggagttggtcatcgtaaatggaataggtgcttccttctctctctctctctctaaacgagattt 16955106  T
Q  673 tattgttctcattatctgattccgcatcgttactttaggtatcgtcgtcatcctttactgttacggcaca 742  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16955107 tgttgttctcattatctgattccgcatcgttcctttaggtatcgtcgtcatcctttactgttacggcaca 16955176  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 547
Target Start/End: Original strand, 35968764 - 35968835
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttg--aaaaacactcaaaactatttttcttt 547  Q
    |||||| |||| |||||||||||| ||||||| || ||||||||  ||| ||||||||||||||||||||||    
T  35968764 attctactttatatttataataaagaagaatgtactaatacttgacaaagacactcaaaactatttttcttt 35968835  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 6629444 - 6629391
Alignment:
Q  490 atttataataaataagaatgcacaaatacttga-aaaacactcaaaactatttt 542  Q
    |||||||||||| |||||||||| ||||||||| || |||||||||||||||||    
T  6629444 atttataataaaaaagaatgcaccaatacttgacaagacactcaaaactatttt 6629391  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 545
Target Start/End: Original strand, 10044719 - 10044781
Alignment:
Q  485 tttagatttataataaataagaatgcacaaatacttgaaaa--acactcaaaactatttttct 545  Q
    |||| |||||| ||||| |||||||||  ||||||||||||  ||||||||||||||||||||    
T  10044719 tttacatttatgataaaaaagaatgcatcaatacttgaaaaatacactcaaaactatttttct 10044781  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 545
Target Start/End: Complemental strand, 25111212 - 25111143
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||||| |||| |||||| ||||| |||||||||  ||||||||| |||  |||||||||||||||||||    
T  25111212 attctactttacatttatgataaagaagaatgcagcaatacttgacaaagacactcaaaactatttttct 25111143  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 545
Target Start/End: Complemental strand, 25170303 - 25170234
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||||| |||| |||||| ||||| |||||||||  ||||||||| |||  |||||||||||||||||||    
T  25170303 attctactttacatttatgataaagaagaatgcagcaatacttgacaaagacactcaaaactatttttct 25170234  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 7931552 - 7931481
Alignment:
Q  485 tttagatttataataaataagaatgcacaaatacttgaaaa--acactcaaaactatttttcttttctctct 554  Q
    |||| |||||| ||||| |||||||||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  7931552 tttacatttatgataaagaagaatgcactaatacttgaaaaagacactcaaaactattttttttttctctct 7931481  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 545
Target Start/End: Original strand, 24356155 - 24356224
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||||| |||| |||||| ||||| |||||||||  |||||||||||||  |||||||||||| ||||||    
T  24356155 attctactttacatttatgataaagaagaatgcatcaatacttgaaaaaggcactcaaaactagttttct 24356224  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 545
Target Start/End: Original strand, 53051077 - 53051139
Alignment:
Q  485 tttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||| |||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  53051077 tttacatttatgataaacaagaatgcacaaatacttgaaaaaggcactcaaaactatttttct 53051139  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 545
Target Start/End: Original strand, 28791352 - 28791421
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||||| |||| |||||| ||||| |||||||||| |||||||||||||  |||||||||||||||||||    
T  28791352 attctagtttacatttatgataaagaagaatgcaccaatacttgaaaaaggcactcaaaactatttttct 28791421  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 10728973 - 10728907
Alignment:
Q  490 atttataataaataagaatgcacaaatacttga-aaaacactcaaaactatttttcttttctctcttt 556  Q
    |||||| ||||  |||||||||||||||||| | || |||||||||||||||||| ||||||||||||    
T  10728973 atttatgataagaaagaatgcacaaatacttaacaagacactcaaaactattttt-ttttctctcttt 10728907  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 545
Target Start/End: Original strand, 41726565 - 41726634
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||||| |||| |||||| ||||| |||||||||  |||||||||||||  ||||||||||||| |||||    
T  41726565 attctactttacatttatgataaagaagaatgcaacaatacttgaaaaaggcactcaaaactatatttct 41726634  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 541
Target Start/End: Original strand, 24288467 - 24288532
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactattt 541  Q
    |||||| |||| |||||| ||||| ||||||||||||||||||||||||  |||||||||||||||    
T  24288467 attctactttacatttatgataaagaagaatgcacaaatacttgaaaaaggcactcaaaactattt 24288532  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 545
Target Start/End: Complemental strand, 45218221 - 45218152
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||||| |||| |||||| ||||| |||||||||| |||||||||||||  |||||||||||||||||||    
T  45218221 attctactttacatttatgataaagaagaatgcaccaatacttgaaaaaggcactcaaaactatttttct 45218152  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 544
Target Start/End: Original strand, 43007938 - 43008006
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttg--aaaaacactcaaaactatttttc 544  Q
    |||||| |||| |||||| ||||| || ||||||||||||||||  ||| |||||||||||||||||||    
T  43007938 attctaatttaaatttatgataaagaaaaatgcacaaatacttgacaaagacactcaaaactatttttc 43008006  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 545
Target Start/End: Complemental strand, 30659543 - 30659474
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    |||||| |||| |||||| ||||| ||||| ||||||||| |||| |||  |||||||||||||||||||    
T  30659543 attctactttatatttatgataaagaagaacgcacaaatatttgacaaaggcactcaaaactatttttct 30659474  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 547
Target Start/End: Complemental strand, 12267695 - 12267624
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttcttt 547  Q
    |||||| |||| |||||| ||||| ||||||| || |||||||||||||  |||||||||||||||||||||    
T  12267695 attctactttacatttatgataaagaagaatgtaccaatacttgaaaaatgcactcaaaactatttttcttt 12267624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 520
Target Start/End: Original strand, 16956587 - 16956629
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatactt 520  Q
    |||||| |||| |||||| ||||||||||||||||||||||||    
T  16956587 attctactttatatttatgataaataagaatgcacaaatactt 16956629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 545
Target Start/End: Original strand, 44633201 - 44633269
Alignment:
Q  479 ttctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttct 545  Q
    ||||| |||| |||||| ||||| |||||||||| ||||||||| |||  |||||||||||||||||||    
T  44633201 ttctactttacatttatcataaagaagaatgcaccaatacttgacaaagacactcaaaactatttttct 44633269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 552
Target Start/End: Complemental strand, 10099788 - 10099713
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttgaaaaa--cactcaaaactatttttcttttctct 552  Q
    |||||| |||| |||||| ||||| || ||||||| ||||||| |||||  ||||||||||||||||| ||||||||    
T  10099788 attctactttaaatttatgataaagaaaaatgcaccaatacttaaaaaatacactcaaaactattttt-ttttctct 10099713  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 536
Target Start/End: Complemental strand, 12499 - 12439
Alignment:
Q  478 attctattttagatttataataaataagaatgcacaaatacttg--aaaaacactcaaaac 536  Q
    |||||| |||| |||||||||||| |||||||||| ||||||||  ||| |||||||||||    
T  12499 attctactttacatttataataaagaagaatgcactaatacttgacaaagacactcaaaac 12439  T

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