View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6043_low_7 (Length: 315)
Name: NF6043_low_7
Description: NF6043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6043_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 14774276 - 14774558
Alignment:
| Q |
11 |
cacagacagcagatgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcgga |
110 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| || |
|
|
| T |
14774276 |
cacagatagcagatgacggattaccatgaaaacccatgtataccaagttctccacactaaagattgggtttagaagtgtcatgagtgcccactgttcaga |
14774375 |
T |
|
| Q |
111 |
aaacacataatataaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaagg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
14774376 |
aaacacataatataaatcaacggtgatgcaaattaaatcctatatgcattgaaaagatacacagaccagaca-------atacatcatgtaaaactgagg |
14774468 |
T |
|
| Q |
211 |
caaatttgatcctcagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaat |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
14774469 |
caaatttgattctcagaatacttttcaaattgagtgataaaactatgcatagaaggccaccacttttcttcaaacattgctcaacaaaat |
14774558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 15016356 - 15016591
Alignment:
| Q |
18 |
agcagatgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacaca |
117 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||| | || |||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
15016356 |
agcagatgatggatcaccaggataaccaatgtacatcagattctccacactaaaggtcgggtttagaagtgtcatgagtgcccactgtttggaaaacata |
15016455 |
T |
|
| Q |
118 |
taatataaa--tcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaat |
215 |
Q |
| |
|
||||||||| ||| | ||||||||||| |||| |||||| || ||||||||||||||||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
15016456 |
taatataaaaatcagcggtgatgcaaataaaatactatatgcagggaaaagatacacagaccagacgtacagtcatacatcatgtaaaactgaggcaacc |
15016555 |
T |
|
| Q |
216 |
ttgatcctcagaatacttttcaaattgagtgataaa |
251 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||| |
|
|
| T |
15016556 |
atgattctcaaaatacttttcaaatatagtgataaa |
15016591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 17881574 - 17881861
Alignment:
| Q |
19 |
gcagatgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacacat |
118 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| ||| || ||||||||||||||| |||| |||||||||| |||||||||||||||| | |||||| || |
|
|
| T |
17881574 |
gcagatgatggatcaccaggataaccaatgcatatcaggttctccacactaaaggttggatttagaagtgtcatgagtgcccactgtccaaaaaacatat |
17881673 |
T |
|
| Q |
119 |
a----atataaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaa |
214 |
Q |
| |
|
| ||| || |||| || |||||| ||||||||| || | || ||| || |||||||||||| || ||||||||||||||||||||| || || |
|
|
| T |
17881674 |
atgttataaaattcaatggtaatgcaagttaaatgctgcatgtactg-aaatatgcacagaccagacgtacagtcatacatcatgtaaaactgagataac |
17881772 |
T |
|
| Q |
215 |
tttgatcctcagaatacttttcaaattgagtgataaaac---tatccatagaagcccaccacttttctacaaacattgctcaacaaaat |
300 |
Q |
| |
|
||||| | || | |||| |||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
17881773 |
cttgattcccaaagaacttatcaaattgagtgatcaaactattattcatagaagcccaccactcttctacaaacattgttcaacaaaat |
17881861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 15049336 - 15049384
Alignment:
| Q |
233 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctac |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15049336 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctac |
15049384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 15049255 - 15049314
Alignment:
| Q |
124 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacat |
183 |
Q |
| |
|
||||||| ||||||||||| ||||| || | ||| |||||||||||||||||||||||| |
|
|
| T |
15049255 |
aaatcaattgtgatgcaaatgaaatgatacacacactgaaaagatacacagaccagacat |
15049314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 15048844 - 15048890
Alignment:
| Q |
59 |
tctccacactaaatattgggtttagaagtgccatgagtgcccactgt |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
15048844 |
tctccacactaagggttgggtttagaagtgtcatgagtgcccactgt |
15048890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 124 - 299
Target Start/End: Complemental strand, 36875384 - 36875211
Alignment:
| Q |
124 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcct |
223 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||| |||||| |||| || |
|
|
| T |
36875384 |
aaatcaacagcgatgcaaat-aaatgttatatgcattgaaaagatacacagacaagacatacagtcatacatcatgcaaaactgaggcaaccgtgattct |
36875286 |
T |
|
| Q |
224 |
cagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaa |
299 |
Q |
| |
|
|| || ||| | ||||||||| |||| ||| | ||||||||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
36875285 |
ca-aacactaattaaattgagtaataagactttacatagaagcccgccactcttctatgaacattgttcaacaaaa |
36875211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 133 - 298
Target Start/End: Complemental strand, 36875869 - 36875706
Alignment:
| Q |
133 |
gtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcctcagaatact |
232 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||||| ||||| | ||||| ||||||||||||| | |||| ||||| |||| || ||| |
|
|
| T |
36875869 |
gtgatgcaaat-aaatgttatatgcattgaaaagatacacagaccatacatacaatcatatatcatgtaaaactgaagcaatcttgattctca-aacact |
36875772 |
T |
|
| Q |
233 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaa |
298 |
Q |
| |
|
|| |||| ||||||||||||| ||||||||| | ||| ||| |||||| ||||||| |||||||| |
|
|
| T |
36875771 |
atttaaatagagtgataaaactttccatagaaactcacaactcttctacgaacattgttcaacaaa |
36875706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 36875632 - 36875582
Alignment:
| Q |
237 |
aaattgagtgataaaactatccatagaagcccaccacttttctacaaacat |
287 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || ||| ||||| |
|
|
| T |
36875632 |
aaattgagtgagaaaaccatccatagaagcccaccactcttatacgaacat |
36875582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University