View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6043_low_9 (Length: 251)
Name: NF6043_low_9
Description: NF6043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6043_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 42 - 251
Target Start/End: Complemental strand, 29604944 - 29604735
Alignment:
| Q |
42 |
tgtcagaacagtcagcacagctccttcagtcatgccttgatctgtgcttctgctgtctacattttcaactctgcattaatctcaatcaataacattgtct |
141 |
Q |
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| T |
29604944 |
tgtcagaacagtcagcacagctccttcagtcatgccttgatctgtgcttctgctgtctacattttcaactctgcattaatctcaatcaataacattgtct |
29604845 |
T |
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| Q |
142 |
acaattcaaatctatttttgtaactcctccagctagcatataagatcaatatcaatattgtcattaatcttattaaatgagattattgaacaattgtata |
241 |
Q |
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| T |
29604844 |
ataattcaaatctgtttttgtaactcctccagctagcatataagatcaatatcaatattgtcattaatcttattaaatgagattattgcacaattgtata |
29604745 |
T |
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| Q |
242 |
tttatatcct |
251 |
Q |
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|||||||||| |
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| T |
29604744 |
tttatatcct |
29604735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 46 - 248
Target Start/End: Original strand, 20076058 - 20076262
Alignment:
| Q |
46 |
agaacagtcagcacagctccttcagtcatgccttgatctgtgcttctgctgtctacattttcaactctgcattaatctcaatcaataacattgtctacaa |
145 |
Q |
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||||||| || ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||||| ||| || || |||||||||| |
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| T |
20076058 |
agaacagccaacacagctccttcagttatgccttgatctgcgcgtctgctgtctacattttcaacactgcattaatcttaattaacaaacttgtctacaa |
20076157 |
T |
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| Q |
146 |
ttcaaatctatttttgtaactcctccagctagcatataagatc-aatatcaatattgtcattaatct-tattaaatgagattattgaacaattgtatatt |
243 |
Q |
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||||||| | |||||| ||||| |||||||||||||||||||| || ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
20076158 |
ttcaaatatgtttttgcaactcttccagctagcatataagatcaaacatcaaaattgtcattaatctaaattcaatgagattattgcacaattgtatatt |
20076257 |
T |
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| Q |
244 |
tatat |
248 |
Q |
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||||| |
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| T |
20076258 |
tatat |
20076262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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