View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6044_low_1 (Length: 379)
Name: NF6044_low_1
Description: NF6044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6044_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 14817572 - 14817219
Alignment:
| Q |
8 |
cgaagaatataatatttttgcatacaacattaatttgttttgtttgggtgggatgcagagagtcattgataaggaagcagctgggatttcataattccaa |
107 |
Q |
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| T |
14817572 |
cgaagaatataatatttttgcatacaacattaatttgttttgtttgggtggtatgcagagagtcattgataaggaagcagctgggatttcataattccaa |
14817473 |
T |
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| Q |
108 |
tgaggagatttgagtagtcgttggtggttacatctggaatttnnnnnnntaaaatcagtttgtattatggaatgctataaatcctttttagaccataaag |
207 |
Q |
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| T |
14817472 |
tgaggagatttgagtagtcgttggtggttacatctggaatttaaaaaactaaaatcagtttgtattatggaatgctataaatcctttttagaccataaag |
14817373 |
T |
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| Q |
208 |
taaccaagtcctcgccttcccctgcactgtgttgtgtggagccagtgactcaagatgaacaaaattctcatattacagcttttcattcaggagatcgatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14817372 |
taaccaagtcctcgccttcccctgcactgtgttgtgtggagccagtgactcaagatgaacaaaattctcatattacagcttttcattcaggagatcgatc |
14817273 |
T |
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| Q |
308 |
cacaaattcagataatgaatcttcttcatcaaagaccgtgcgtgatgtacatat |
361 |
Q |
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| T |
14817272 |
cacaaattcagataatgaatcttcttcatcaaagaccgtgcgtgatgtacatat |
14817219 |
T |
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