View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6044_low_3 (Length: 265)
Name: NF6044_low_3
Description: NF6044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6044_low_3 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 32249443 - 32249685
Alignment:
| Q |
17 |
atgaaccccatctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32249443 |
atgaaccccatctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattg |
32249542 |
T |
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| Q |
117 |
caataggtttgtattggtctatagatgaagcatttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatccaactggtggtgaa |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32249543 |
caataggtctgtattggtctatagatgaagcatttggaatttttggaagaagagcaataatgttagagttgaatcctggcaaaatccaactggtggtgaa |
32249642 |
T |
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| Q |
217 |
gaattctagaacaactttaactacatcttctttgatgatgtcc |
259 |
Q |
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| T |
32249643 |
gaattctagaacagctttaactacatcttctttgatgatgtcc |
32249685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 30900664 - 30900507
Alignment:
| Q |
47 |
gtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggtctatagatgaag |
146 |
Q |
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| T |
30900664 |
gtaggcatgattggagcaagtttatctgcaataacatttgatataatcttgaatttgaaatttaccattataataggtctgaaatgatctatagaagaag |
30900565 |
T |
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| Q |
147 |
catttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatcca |
204 |
Q |
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| T |
30900564 |
catttagagttttaggaagaagagaaataatgtttgaattgaagcctggaaatatcca |
30900507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 21854222 - 21854409
Alignment:
| Q |
35 |
tcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggt |
134 |
Q |
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||||||||||| | ||||||||||||||||||||| | |||| || ||||| ||||| ||||| ||||| || ||||||| ||||||| |||| |||| |
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| T |
21854222 |
tcagaaatgatggaaggcatgattggagcaagtctatcttcaatgacctttgagatgatcttgaaattaaagttggccattgaaataggtctgtactggt |
21854321 |
T |
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| Q |
135 |
ctatagatgaagcatttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatccaactggtggtgaagaattc |
222 |
Q |
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| T |
21854322 |
caattgatgaggcatttggcacttttggaagaagtgcaataatattggagttatatcctagcaaaatccaactagaggtgaagaattc |
21854409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 127793 - 127714
Alignment:
| Q |
62 |
gcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggtctataga |
141 |
Q |
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||||||||| | || | |||||||||||| | ||||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
127793 |
gcaagtctgtctgctagaacttttgaaataactttgaatttaaaattagccattgcaattggcctatattggtctataga |
127714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 21920615 - 21920515
Alignment:
| Q |
17 |
atgaaccccatctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattg |
116 |
Q |
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|||||||||||||||| | ||| |||| | ||||||||| ||||||| |||||| |||||| ||||| || ||||| ||||| ||||| ||||||| |
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| T |
21920615 |
atgaaccccatctgttcctgggaagtgatgtttggcatgatttgagcaagcctgacaacaataatctttgagattattttaaattttaaatttgccattg |
21920516 |
T |
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| Q |
117 |
c |
117 |
Q |
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| T |
21920515 |
c |
21920515 |
T |
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