View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6045_high_3 (Length: 355)

Name: NF6045_high_3
Description: NF6045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6045_high_3
NF6045_high_3
[»] chr5 (2 HSPs)
chr5 (9-192)||(28385570-28385753)
chr5 (9-192)||(12540921-12541104)
[»] chr7 (1 HSPs)
chr7 (18-190)||(3417296-3417468)
[»] chr2 (3 HSPs)
chr2 (9-192)||(13440436-13440619)
chr2 (11-192)||(13448599-13448780)
chr2 (43-191)||(13455071-13455219)
[»] chr4 (6 HSPs)
chr4 (78-192)||(48958383-48958497)
chr4 (78-192)||(48912171-48912285)
chr4 (277-331)||(48958244-48958298)
chr4 (114-188)||(48974349-48974423)
chr4 (124-170)||(48965587-48965633)
chr4 (272-320)||(48961404-48961452)
[»] chr6 (3 HSPs)
chr6 (9-191)||(12589926-12590108)
chr6 (10-192)||(12483222-12483404)
chr6 (277-334)||(12590197-12590254)
[»] scaffold0536 (3 HSPs)
scaffold0536 (78-192)||(6337-6451)
scaffold0536 (277-332)||(6536-6591)
scaffold0536 (277-331)||(10518-10572)
[»] chr8 (2 HSPs)
chr8 (272-330)||(12641501-12641559)
chr8 (116-192)||(12641345-12641421)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 28385753 - 28385570
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28385753 agcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagc 28385654  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcct 192  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  28385653 ataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcct 28385570  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 12541104 - 12540921
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    ||||| || |||||| ||| ||| || |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  12541104 agcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 12541005  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcct 192  Q
    ||||| ||||||| ||| |||||||||||||||||||| || ||| |||||| |   |||||||||||||||||||||||||||    
T  12541004 ataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcct 12540921  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 3417296 - 3417468
Alignment:
Q  18 gggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccat 117  Q
    |||||||||| ||| || ||| ||||| |||||||||   |||||||| ||||| | ||||||||||||  ||||| |||||||||||||| ||||| ||    
T  3417296 gggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactat 3417395  T
Q  118 ttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttc 190  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  3417396 ttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 13440619 - 13440436
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||||| |||||| ||| ||||||||| |  |||||| ||| |||  |||||| | ||| ||  ||||||||| ||  ||||| ||||||||||||||    
T  13440619 agcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagc 13440520  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcct 192  Q
    || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  13440519 atcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcct 13440436  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 13448780 - 13448599
Alignment:
Q  11 cagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcat 110  Q
    |||||| |||||| ||| ||| |||||  | ||||||| ||||||  |||||| | ||| || |||||||||||||  ||||| ||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  111 aaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcct 192  Q
     ||| |||| ||||||||||||||||| ||||| || || || ||||||||||| |||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcct 13448599  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 13455219 - 13455071
Alignment:
Q  43 cacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgaga 142  Q
    ||||||||||||| ||||||  | ||| || |||||||||||||  ||||| |||||||||||||||| ||  |||  ||| ||||||||||||||||||    
T  13455219 cacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgaga 13455120  T
Q  143 ttgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 191  Q
    | || ||| || |||||||| ||||||| || |||||||||||||||||    
T  13455119 tggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 48958497 - 48958383
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||||||  ||||| |||| ||||||||||||    |||| |||||||||||||| |||||||||||||| |  ||||||||||||||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  178 atatgggttgttcct 192  Q
     ||||||||||||||    
T  48958397 gtatgggttgttcct 48958383  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 48912171 - 48912285
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||| || |||||| |||| |||||||||  |   ||||| || ||||||||||| ||||||||||||||||  || ||||||||  |||||  ||||    
T  48912171 taactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 48912270  T
Q  178 atatgggttgttcct 192  Q
    |||||||||||||||    
T  48912271 atatgggttgttcct 48912285  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 48958298 - 48958244
Alignment:
Q  277 aagaaaggtttgattattaggggatgggccccacaagttatgattctaagccaca 331  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||    
T  48958298 aagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccaca 48958244  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 48974423 - 48974349
Alignment:
Q  114 ccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgt 188  Q
    ||||||| || |||| ||| | |||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  48974423 ccatttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  124 gataaacaactatatgagattgcgtgcgcaatagaagcatcaggtca 170  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 48961452 - 48961404
Alignment:
Q  272 aaaataagaaaggtttgattattaggggatgggccccacaagttatgat 320  Q
    |||| ||||| |||||||| |||| ||| ||||||||||||||||||||    
T  48961452 aaaagaagaagggtttgatcattaaggggtgggccccacaagttatgat 48961404  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 12589926 - 12590108
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||| | |||||| ||||||| ||||| || ||| ||||| ||||  ||||| || ||  |||||| |||||| ||  ||||| |||| ||||| |||    
T  12589926 agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc 12590025  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 191  Q
    |||  | ||||||| ||||||||||| ||||||||| |||| |  |||||||||||||| |||  |||| |||||||| ||||    
T  12590026 atatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 12483222 - 12483404
Alignment:
Q  10 gcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagca 109  Q
    ||||||| |||||||||||||| |||||||| ||| ||||| |  |  ||||| || ||| ||| ||  || |||||  ||||| |||| ||||| |||     
T  12483222 gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc 12483321  T
Q  110 taaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcct 192  Q
    ||  | |||||||||||||||| || || || ||| | |||| |||||||||||| ||| |   |||||||||||||||||||    
T  12483322 tatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcct 12483404  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 12590197 - 12590254
Alignment:
Q  277 aagaaaggtttgattattaggggatgggccccacaagttatgattctaagccacaatg 334  Q
    ||||| |||||||| |||||||| |||||||||||||| |||||| | ||||||||||    
T  12590197 aagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatg 12590254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 6337 - 6451
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||||||  ||||| |||| ||||||||| ||  || |||| | ||||||||||| || |||||||| || |  ||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  178 atatgggttgttcct 192  Q
    |||||||||||||||    
T  6437 atatgggttgttcct 6451  T

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Target: scaffold0536; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 6536 - 6591
Alignment:
Q  277 aagaaaggtttgattattaggggatgggccccacaagttatgattctaagccacaa 332  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||| | ||||||||    
T  6536 aagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaa 6591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 10518 - 10572
Alignment:
Q  277 aagaaaggtttgattattaggggatgggccccacaagttatgattctaagccaca 331  Q
    ||||| ||||||||||||| ||| |||||||| || |||||||||||||||||||    
T  10518 aagaagggtttgattattaagggttgggcccctcaggttatgattctaagccaca 10572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 12641501 - 12641559
Alignment:
Q  272 aaaataagaaaggtttgattattaggggatgggccccacaagttatgattctaagccac 330  Q
    |||||||||||||||| || |||||||  |||||||||||||| |||||| ||||||||    
T  12641501 aaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccac 12641559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 12641345 - 12641421
Alignment:
Q  116 atttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcct 192  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||   |||||||||  |||  ||||||||||||||    
T  12641345 atttctctgataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcct 12641421  T

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