View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6045_low_1 (Length: 467)
Name: NF6045_low_1
Description: NF6045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6045_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 42141459 - 42141631
Alignment:
| Q |
1 |
tacggagaaaaagaaaatgggattgactatttgatttttt----gtttcattttattctcaaatatattttgatgggatagattagatgaattggaatat |
96 |
Q |
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| T |
42141459 |
tacggagaaaaagaaaatggg-ttgactatttgttttttttttcttttcattttattctcaaatctattttgatgggatggattggatgaattggaatat |
42141557 |
T |
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| Q |
97 |
tttgaacgtaaagaattgatgatgatgttgtttttgtctgcaaagtttgataattgatagtgtaactttcaaca |
170 |
Q |
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| T |
42141558 |
tttgaacgcaaagaattgatgatgatgttgtttttgtctacaaagtttgataactgacggtgtaactttcaaca |
42141631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 308 - 450
Target Start/End: Original strand, 42141833 - 42141971
Alignment:
| Q |
308 |
tgaattccttacttgagattacaacgttttgcagcaatgatctaattaagtcataatattcggcctatggagcatgaagaagcttccaagtgcattgtgt |
407 |
Q |
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| T |
42141833 |
tgaactccttacttgagattaccatgttttgcagcaatgatctaa----gtcataatattcggcctatagagcatgaagaagcttccaagtgcattgtct |
42141928 |
T |
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| Q |
408 |
gtcactagctttaaccctttgctaatttaaacagaagataagt |
450 |
Q |
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| T |
42141929 |
gtcactagctttaaccctttgctaatttaaacagaagataagt |
42141971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 42141655 - 42141804
Alignment:
| Q |
164 |
ttcaacatattaatagttgttaatgattacatatatgaataaggttg-ttggtcacatgt-cttgaagtttttgtgttatgtatgtctagacaaaatagg |
261 |
Q |
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| T |
42141655 |
ttcaacatattaatagttgtta-tgattgcacatatgaataaggtaggttggtgtcattttctcaaagtttttgtgttatgtatgtctagacaaaatagg |
42141753 |
T |
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| Q |
262 |
aataaaataattgtagaagagaaaaactatttttagttaaatgacatgaat |
312 |
Q |
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| T |
42141754 |
aataaaataattggagaagagaaaaactatttttaattaaatgacatgaat |
42141804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 40885748 - 40885800
Alignment:
| Q |
35 |
ttttttgtttcattttattctcaaatatattttgatgggatagattagatgaa |
87 |
Q |
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| T |
40885748 |
ttttatgtttcattttattctcaaatacattttaataggattgatcagatgaa |
40885800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 25520224 - 25520163
Alignment:
| Q |
105 |
taaagaattgatgatgatgttgtttttgtctgcaaagtttgataattgatagtgtaactttc |
166 |
Q |
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| T |
25520224 |
taaagaattgatgatgatgttgtttttgtctgcaaagtttgataattgatagtgtacctttc |
25520163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 7052597 - 7052646
Alignment:
| Q |
120 |
gatgttgtttttgtctgcaaagtttgataattgatagtgtaactttcaac |
169 |
Q |
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| T |
7052597 |
gatgttgtttttgtcttcaaagtttgataaattatggggtaactttcaac |
7052646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 8550587 - 8550540
Alignment:
| Q |
249 |
tagacaaaataggaataaaataattgtagaagagaaaaactatttttagtt |
299 |
Q |
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| T |
8550587 |
tagacaaaataggattaaaataattg---aagagaaaaactatttttagtt |
8550540 |
T |
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