View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6045_low_2 (Length: 397)
Name: NF6045_low_2
Description: NF6045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6045_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 38228091 - 38228458
Alignment:
| Q |
20 |
ctgcctagttataacagtaaggtcaaagttaagttatgcattcacaagcttttaatggaaaaagagaagccaagctaaaccagaatagtgtaaactttat |
119 |
Q |
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| T |
38228091 |
ctgcctagttataacagtaaggtcaaagttaagttatgcattcacaagcttttaatggaaaaagagaagccaagctaaaccagaatagtgtaaactttat |
38228190 |
T |
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| Q |
120 |
taagatcatgaggctataaagtatacgaaaattcccgcatggctacagaaacatcttttcatcaaggcaaagagcgcatgcgtttaccaatttctgcata |
219 |
Q |
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| T |
38228191 |
taagatcatgaggctataaagtatacaaaaattcccgcatggctacagaaacatcttctcagcaaggcaaagagcgcatgcgtttaccaatttctgcata |
38228290 |
T |
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| Q |
220 |
aaattctcacctgataatctcaatatttcaaataaataatctgcaatattttcttccactaagacttgaatctgattgcctgaagtcccaactgaagata |
319 |
Q |
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| T |
38228291 |
aaattctcacctgataatctcaatatttcaaataaataatctgcaatattttcttccactaagacttgaatctgattgcctgaagtcccaactgaagata |
38228390 |
T |
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| Q |
320 |
aataatgaaagagcaaatctagagctccgatttggacttggctgactgatgaaagcaacgggcctttg |
387 |
Q |
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| T |
38228391 |
aataatgaaagagcaaatctagagctccgatttggacttggctgactgatgaaagcaacgggcctttg |
38228458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 244 - 387
Target Start/End: Original strand, 16698762 - 16698903
Alignment:
| Q |
244 |
atttcaaataaataatctgcaatattttcttccactaagacttgaatctgattgcctgaagtcccaactgaagataaataatgaaagagcaaatctagag |
343 |
Q |
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| T |
16698762 |
atttcaaataaataacctgcaatattttcttccaccacgacatgaatctgattgccttaagtcccaactgaagacaaataatgaaagtgcaaatctagag |
16698861 |
T |
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| Q |
344 |
ctccgatttggacttggctgactgatgaaagcaacgggcctttg |
387 |
Q |
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| T |
16698862 |
ttcagatttggaattgact--ctgatgaaagtaacgggcctttg |
16698903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 258
Target Start/End: Original strand, 39304865 - 39305020
Alignment:
| Q |
107 |
gtgtaaactttattaagatcatgaggctataaagtatacgaaaattcccgcatggctacagaaacatct-tttcatcaaggcaaagagcgcatgcgttta |
205 |
Q |
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| T |
39304865 |
gtgtaaactttattcaaataatgaggctataaagtatgcaaagtttccttcatagatacataaatatctctttcatcaaggcaaaggacgcctgcattta |
39304964 |
T |
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| Q |
206 |
ccaatttctgcataaa---attctcacctgataatctcaatatttcaaataaataa |
258 |
Q |
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| T |
39304965 |
gcaatttttgcataaagttcttctcccctggtaacctcaatatttcaaataaataa |
39305020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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