View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6045_low_4 (Length: 249)

Name: NF6045_low_4
Description: NF6045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6045_low_4
NF6045_low_4
[»] chr2 (10 HSPs)
chr2 (12-229)||(10474178-10474393)
chr2 (133-218)||(10518656-10518743)
chr2 (12-56)||(28105346-28105390)
chr2 (12-61)||(10860713-10860762)
chr2 (18-61)||(10518547-10518590)
chr2 (134-169)||(10545275-10545310)
chr2 (135-176)||(7482218-7482259)
chr2 (12-61)||(9080029-9080078)
chr2 (135-168)||(10492906-10492939)
chr2 (12-61)||(10848809-10848858)
[»] chr5 (1 HSPs)
chr5 (12-169)||(33602573-33602724)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 10474178 - 10474393
Alignment:
Q  12 gaatattggtataaacttccgtgttatggtggccctacgaactgcttcctnnnnnnnnnnnnnnnataataacaaaaagaaaactgtttacaagataaga 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||    
T  10474178 gaatattggtataaacttccgtgctatggtggccctacgaactgcttcctacacacacacaca--ataataacaaaaagaaaactgtttacaagataaga 10474275  T
Q  112 tctgtagatnnnnnnnnnnnncgaagtaacaactggttttcatatatcacactatatctaaaaatacatctggcttcaaaggtacctgaacaaaaagtgg 211  Q
    |||||||||            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10474276 tctgtagatgggaggtgggggcgaagtaacaactggttttcgtatatcacactatatctaaaaatacatctggcttcaaaggcacctgaacaaaaagtgg 10474375  T
Q  212 gttttccaatggatctaa 229  Q
    ||||||||||||||||||    
T  10474376 gttttccaatggatctaa 10474393  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 10518656 - 10518743
Alignment:
Q  133 cgaagtaacaactggttttcatatatcacactatatctaaaaat--acatctggcttcaaaggtacctgaacaaaaagtgggttttcc 218  Q
    |||||||||||||||||||||||||||||||||||| | |||||  ||||||| |||||  ||||| || ||||||||||||||||||    
T  10518656 cgaagtaacaactggttttcatatatcacactatatttgaaaatgcacatctgccttcagtggtacatggacaaaaagtgggttttcc 10518743  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 28105390 - 28105346
Alignment:
Q  12 gaatattggtataaacttccgtgttatggtggccctacgaactgc 56  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||    
T  28105390 gaatactggtataaacttccgtgctatggtggccctacgaactgc 28105346  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 10860713 - 10860762
Alignment:
Q  12 gaatattggtataaacttccgtgttatggtggccctacgaactgcttcct 61  Q
    ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||    
T  10860713 gaatactggtataaatttccgtgctatggtgaccctacgaactgcttcct 10860762  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 10518547 - 10518590
Alignment:
Q  18 tggtataaacttccgtgttatggtggccctacgaactgcttcct 61  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||    
T  10518547 tggtataaatttccgtgctatggtggcccgacgaactgcttcct 10518590  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 10545275 - 10545310
Alignment:
Q  134 gaagtaacaactggttttcatatatcacactatatc 169  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10545275 gaagtaacaactggttttcgtatatcacactatatc 10545310  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 7482259 - 7482218
Alignment:
Q  135 aagtaacaactggttttcatatatcacactatatctaaaaat 176  Q
    ||||||| |||||||||| |||||||| ||||||||||||||    
T  7482259 aagtaactactggttttcgtatatcacgctatatctaaaaat 7482218  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 9080078 - 9080029
Alignment:
Q  12 gaatattggtataaacttccgtgttatggtggccctacgaactgcttcct 61  Q
    ||||| |||||||||||||   | ||||||||||||||||||||||||||    
T  9080078 gaatactggtataaacttctccgctatggtggccctacgaactgcttcct 9080029  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 10492906 - 10492939
Alignment:
Q  135 aagtaacaactggttttcatatatcacactatat 168  Q
    |||||||||||||||||| |||||||||||||||    
T  10492906 aagtaacaactggttttcgtatatcacactatat 10492939  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 10848809 - 10848858
Alignment:
Q  12 gaatattggtataaacttccgtgttatggtggccctacgaactgcttcct 61  Q
    ||||| ||||||||| ||  ||| ||||||||||||||||||||||||||    
T  10848809 gaatactggtataaatttgtgtgctatggtggccctacgaactgcttcct 10848858  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 33602573 - 33602724
Alignment:
Q  12 gaatattggtataaacttccgtgttatggtggccctacgaactgcttcctnnnnnnnnnnnnnnnataataacaaaaagaaaactgtttacaagataaga 111  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||||||               |||||||||||||||||||| ||||||||||||||    
T  33602573 gaataatggtataaacttccgtgctatggtggccctacaaactgcttcct------acacacacaataataacaaaaagaaaactatttacaagataaga 33602666  T
Q  112 tctgtagatnnnnnnnnnnnncgaagtaacaactggttttcatatatcacactatatc 169  Q
    | |||||||            |||||||||||||||||||||||||||| ||||||||    
T  33602667 tttgtagatggcgggtgggggcgaagtaacaactggttttcatatatcatactatatc 33602724  T

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