View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6045_low_6 (Length: 238)
Name: NF6045_low_6
Description: NF6045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6045_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 4268623 - 4268821
Alignment:
| Q |
40 |
tccaacttaccatggagtaagaaaacgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctca |
139 |
Q |
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| T |
4268623 |
tccaacttatcatggagtaagaaaacgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctca |
4268722 |
T |
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| Q |
140 |
acaccagaaatggcagctagagcacacgatgtagcagctttaaccatcaaaggaaaaaccgcaattctcaattttcctcatttatcaaacatgcttcca |
238 |
Q |
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| T |
4268723 |
acaccagaaatggcagctagagcacacgatgtagcagctttaaccatcaaaggaaaaaccgcaattctcaattttcctcatttatcaaacatgcttcca |
4268821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 505615 - 505541
Alignment:
| Q |
107 |
aaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcacacgatgtagcagcttta |
181 |
Q |
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| T |
505615 |
aaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgcttta |
505541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 43561922 - 43561807
Alignment:
| Q |
65 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
164 |
Q |
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| T |
43561922 |
cgaagctggggaaaatgggtatcggaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgc |
43561823 |
T |
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| Q |
165 |
acgatgtagcagcttt |
180 |
Q |
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| T |
43561822 |
atgatgttgctgcttt |
43561807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 36077810 - 36077746
Alignment:
| Q |
110 |
aaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcacacgatgtagc |
174 |
Q |
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| T |
36077810 |
aaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagc |
36077746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 16357926 - 16357811
Alignment:
| Q |
71 |
tggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcacacgatg |
170 |
Q |
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| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
16357827 |
T |
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| Q |
171 |
tagcagctttaaccat |
186 |
Q |
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| T |
16357826 |
tagctgctttagccat |
16357811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 33602323 - 33602422
Alignment:
| Q |
71 |
tggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcacacgatg |
170 |
Q |
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| T |
33602323 |
tggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggctaggaacattcgcaaccgctgaaatggcagcccgtgcacacgatg |
33602422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 51237910 - 51238019
Alignment:
| Q |
65 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
164 |
Q |
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||||| |||||||||||||| || ||||| || || || |||||||| |||| ||||| || ||||| | ||||| |||||||||||| |||||| |
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| T |
51237910 |
cgaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccggaaatggcagctcgagcac |
51238009 |
T |
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| Q |
165 |
acgatgtagc |
174 |
Q |
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| T |
51238010 |
acgatgtagc |
51238019 |
T |
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