View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_high_11 (Length: 488)

Name: NF6046_high_11
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_high_11
NF6046_high_11
[»] chr5 (6 HSPs)
chr5 (11-281)||(20351142-20351412)
chr5 (11-283)||(5583916-5584188)
chr5 (141-272)||(14724194-14724324)
chr5 (121-252)||(25585882-25586013)
chr5 (229-272)||(21743112-21743155)
chr5 (185-278)||(4852143-4852236)
[»] chr2 (10 HSPs)
chr2 (11-284)||(19933835-19934108)
chr2 (119-272)||(3981701-3981854)
chr2 (73-213)||(29992033-29992173)
chr2 (229-272)||(10420956-10420999)
chr2 (96-164)||(10944198-10944266)
chr2 (96-164)||(10950067-10950135)
chr2 (96-175)||(22849492-22849571)
chr2 (96-163)||(27635117-27635184)
chr2 (234-272)||(6742874-6742912)
chr2 (96-189)||(26370435-26370528)
[»] chr1 (8 HSPs)
chr1 (11-283)||(42311839-42312112)
chr1 (71-272)||(22069784-22069985)
chr1 (119-272)||(47142673-47142826)
chr1 (40-225)||(35537425-35537611)
chr1 (93-213)||(16906749-16906869)
chr1 (121-191)||(20491502-20491572)
chr1 (231-272)||(42132196-42132237)
chr1 (121-213)||(5213102-5213194)
[»] chr3 (11 HSPs)
chr3 (299-488)||(52663917-52664103)
chr3 (11-200)||(634773-634962)
chr3 (73-271)||(17058732-17058930)
chr3 (71-213)||(5561675-5561817)
chr3 (89-162)||(27024098-27024171)
chr3 (75-132)||(27154894-27154951)
chr3 (96-175)||(13503288-13503367)
chr3 (122-224)||(42595620-42595722)
chr3 (121-210)||(43640499-43640588)
chr3 (74-191)||(44328340-44328457)
chr3 (127-211)||(24592090-24592174)
[»] chr6 (3 HSPs)
chr6 (94-272)||(7072512-7072690)
chr6 (73-213)||(35220204-35220344)
chr6 (96-175)||(24177678-24177757)
[»] chr4 (7 HSPs)
chr4 (119-272)||(45421591-45421744)
chr4 (83-190)||(13501511-13501618)
chr4 (114-264)||(21485524-21485674)
chr4 (96-164)||(32663667-32663735)
chr4 (116-163)||(17777916-17777963)
chr4 (121-213)||(8943473-8943565)
chr4 (121-213)||(53708163-53708255)
[»] chr8 (5 HSPs)
chr8 (175-277)||(39118032-39118134)
chr8 (73-213)||(4424636-4424776)
chr8 (96-190)||(10543938-10544032)
chr8 (121-213)||(26381325-26381417)
chr8 (110-210)||(33535481-33535581)
[»] chr7 (4 HSPs)
chr7 (73-210)||(24062577-24062713)
chr7 (96-175)||(21504983-21505062)
chr7 (121-258)||(4648514-4648651)
chr7 (121-213)||(11567556-11567648)
[»] scaffold0006 (1 HSPs)
scaffold0006 (96-175)||(203196-203275)
[»] scaffold0015 (1 HSPs)
scaffold0015 (238-272)||(52168-52202)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 20351412 - 20351142
Alignment:
Q  11 gagttcgaacttggttccaaaaaagtgattgatagctttggagttaataggcatgattcgatggaatttggagctattattaatgattgtaaaactttgt 110  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  20351412 gagttcgaacttgattccaaaaaagtggttgatagctatggagctaatcggcatgattcgacggaatttggagctattattaatgactgtaaaactttgt 20351313  T
Q  111 ttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagttt 210  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  20351312 ttaatcatttctatgaaaactcgagtgtagagtttgttcggagacaagcaaatgggtctgcccatgaattagcaaaggcggccacattatcggctagttt 20351213  T
Q  211 ccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccct 281  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20351212 ccatattttggttacgccaccacattgtattgaacacattttaattaatgatatgctataaggtttcccct 20351142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 5583916 - 5584188
Alignment:
Q  11 gagttcgaacttggttccaaaaaagtgattgatagctttggagttaataggcatgattcgatggaatttggagctattattaatgattgtaaaactttgt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  5583916 gagttcgaacttgattccaaaaaagtggttgatagctttggagctaataggcatgattcgacggaatttggagctattattaatgactgtaaaactttgt 5584015  T
Q  111 ttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagttt 210  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||    
T  5584016 ttaatcatttctatgaaaactcgagtgtagagtttgttcggagacaagcaaatgggactgcccatgaattagcaaaggcggccacattatcgactaattt 5584115  T
Q  211 ccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccctct 283  Q
     |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5584116 tcatattttggttacgccaccacattgtattgaacacattttaattaatgatatgctataagatttcccctct 5584188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 272
Target Start/End: Original strand, 14724194 - 14724324
Alignment:
Q  141 agtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtat 240  Q
    ||||| ||| |||||||||||||| || ||||||||||||| | ||||||| |  |||||| | ||||||| |||| || ||||    |||| ||| |||    
T  14724194 agtttattcggagacaagcaaatgaggttgcccatgaattaactaaggcgg-cttattatcagttagtttcgatatattggttaacataccagattatat 14724292  T
Q  241 tgaacacattttaattaatgatatgctataag 272  Q
    |||||||||||||| |||||| ||||||||||    
T  14724293 tgaacacattttaaataatgaaatgctataag 14724324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 25586013 - 25585882
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttccatatttta 220  Q
    ||||||||||||  |||| |||||||| | |||||||||||||| || || |||| | ||||||||||||| |  |||||| |||||||||||  | |||    
T  25586013 ttatgaaaactctggtgttgagtttgtacggagacaagcaaatgaggttgtccataagttagcaaaggcggccctattatcagctagtttccagctctta 25585914  T
Q  221 gttacgtcaccatattgtattgaacacatttt 252  Q
    |||  | |||   |||||||||||||||||||    
T  25585913 gttgagccacttgattgtattgaacacatttt 25585882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 21743112 - 21743155
Alignment:
Q  229 accatattgtattgaacacattttaattaatgatatgctataag 272  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||    
T  21743112 accatattgtattaaacacattttgattaatgatatgctttaag 21743155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 4852236 - 4852143
Alignment:
Q  185 aaggcggtcacattatcggctagtttccatattttagtt-acgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcc 278  Q
    ||||||||||||||||| |||| ||| ||| |||| ||| || | | || ||||||||||||||||||| |||||||| ||| |||||| |||||    
T  4852236 aaggcggtcacattatcagctaattttcatgttttggttgacat-atcaaattgtattgaacacattttgattaatgaaatgttataagttttcc 4852143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 19934108 - 19933835
Alignment:
Q  11 gagttcgaacttggttccaaaaaagtgattgatagctttggagttaataggcatgattcgatggaatttggagctattattaatgattgtaaaactttgt 110  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  19934108 gagttcgaacttgattccaaaaaagtggttgatagctatggagctaataggcatgattcgacggaatttggagctattattaatgactgtaaaactttgt 19934009  T
Q  111 ttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagttt 210  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  19934008 ttaatcatttttatgaaaactcgagtgtagagtttgttcggagacaagcaaatgaggctgcccatgaattagcaaaggctgccacattatcggctagttt 19933909  T
Q  211 ccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccctctc 284  Q
    ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  19933908 ccatattttggttacgccaccacattgtattgaacacattttaattaatgatatgttataaggttttccctctc 19933835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 272
Target Start/End: Complemental strand, 3981854 - 3981701
Alignment:
Q  119 ttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttccatattt 218  Q
    |||||||||||||| ||||| |||||| ||| ||||||||| |||| || ||||||||||||||| ||||||| | ||| ||| ||||||||||| |||     
T  3981854 ttttatgaaaactctagtgtggagtttattcggagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagctagtttccagattc 3981755  T
Q  219 tagttacgtcaccatattgtattgaacacattttaattaatgatatgctataag 272  Q
    | ||||    |||| | ||||||||||||||||| |||||||| ||||||||||    
T  3981754 tggttaatataccagaatgtattgaacacattttgattaatgaaatgctataag 3981701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 29992033 - 29992173
Alignment:
Q  73 ggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcc 172  Q
    ||||| ||| |||||||| ||||| |||||| |  | |||| ||| | ||||||||||||  |||| |||||||| | |||||||||||||| || ||||    
T  29992033 ggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagtattatgaaaactcttgtgttgagtttgtacggagacaagcaaatgaggttgcc 29992132  T
Q  173 catgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    ||| | |||||||||| || |  ||| || |||||||||||    
T  29992133 cataagttagcaaaggtggccctattgtcagctagtttcca 29992173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 10420999 - 10420956
Alignment:
Q  229 accatattgtattgaacacattttaattaatgatatgctataag 272  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  10420999 accatattgtattgaacacattttgattaatgatatgctttaag 10420956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 10944198 - 10944266
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatg 164  Q
    ||||||||||| | ||||  |||| ||||||||||||||  || |||||||| ||||||||||||||||    
T  10944198 attgtaaaactctctttaggcattattatgaaaactcgacggttgagtttgtacagagacaagcaaatg 10944266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 10950067 - 10950135
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatg 164  Q
    ||||||||||| | ||||  |||| ||||||||||||||  || |||||||| ||||||||||||||||    
T  10950067 attgtaaaactctctttaggcattattatgaaaactcgacggttgagtttgtacagagacaagcaaatg 10950135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 22849492 - 22849571
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccat 175  Q
    ||||||||||| | |||| ||| ||||||||||||||  |||| |||||||| | ||| |||||||||| || |||||||    
T  22849492 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccat 22849571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 27635117 - 27635184
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaat 163  Q
    ||||||||||| | ||||  |||| |||||||||||||| ||| |||||||| | |||||||||||||    
T  27635117 attgtaaaactctctttaggcattattatgaaaactcgactgttgagtttgtacggagacaagcaaat 27635184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 6742912 - 6742874
Alignment:
Q  234 attgtattgaacacattttaattaatgatatgctataag 272  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  6742912 attgtattgaacacatcttaattaatgaaatgctataag 6742874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 26370435 - 26370528
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggc 189  Q
    ||||||||||| | ||||  || | |||||||||||||| ||| |||||||| | ||| |||||||||| || ||| ||| ||||||| |||||    
T  26370435 attgtaaaactctctttaggcaatattatgaaaactcgactgttgagtttgtgcggaggcaagcaaatgaggttgctcataaattagctaaggc 26370528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 42311839 - 42312112
Alignment:
Q  11 gagttcgaacttggttccaaaaaa-gtgattgatagctttggagttaataggcatgattcgatggaatttggagctattattaatgattgtaaaactttg 109  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||  |||    
T  42311839 gagttcgaacttgattccaaaaaaagtggttgatagctttggagctaataggcatgattcgacggaatttggagctattattaattattgtaaaatattg 42311938  T
Q  110 tttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtt 209  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||  |||||    
T  42311939 tttaatcatttatatgaaaactcgagtgtagagtttgttcggagacaagcaaatggggttgtccatgaattagcaaaggcggccacattatcgattagtt 42312038  T
Q  210 tccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccctct 283  Q
    |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  42312039 tccatattttggttatgccaccacattgtattgaacacattttaattaatgatattctataagttttcccctct 42312112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 272
Target Start/End: Original strand, 22069784 - 22069985
Alignment:
Q  71 atggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctg 170  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||  | ||||||||||  ||| | |||||||| | ||||||| | |||| || ||    
T  22069784 atggaatttggagctattattaatgattgtaaatctttgtttaggcaaatatatgaaaactgtagtattgagtttgtgcggagacaaacgaatgaggttg 22069883  T
Q  171 cccatgaattagcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctata 270  Q
    | ||||| ||| ||||||||| |||||| || ||||||||||| |||||  | | |  | || ||||||||||||||||||||| |||||| ||||||||    
T  22069884 ctcatgagttaacaaaggcggccacattgtcagctagtttccaaattttgatcatgctatcaaattgtattgaacacattttaaataatgaaatgctata 22069983  T
Q  271 ag 272  Q
    ||    
T  22069984 ag 22069985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 272
Target Start/End: Original strand, 47142673 - 47142826
Alignment:
Q  119 ttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttccatattt 218  Q
    |||||||||||||| ||||| |||||| |||  |||||| | |||  || ||||||||||||||| ||| ||| | ||| ||| ||||||||||| |||     
T  47142673 ttttatgaaaactctagtgtggagtttattcgaagacaaacgaataaggttgcccatgaattagctaagtcggcctcatcatcagctagtttccagattc 47142772  T
Q  219 tagttacgtcaccatattgtattgaacacattttaattaatgatatgctataag 272  Q
    | ||||    |||| | ||||||||||||||||| |||||||| ||| ||||||    
T  47142773 tggttaatataccagaatgtattgaacacattttgattaatgaaatgttataag 47142826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 35537425 - 35537611
Alignment:
Q  40 tgatagctttggagttaataggcatgattcgatggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgta 139  Q
    |||||| |||| || ||||||| |||| || |  |||||||||||||| |||||||||||||||  | ||| || ||| || |||| |||||| |||||     
T  35537425 tgatagttttgtagctaataggtatgactccaccgaatttggagctataattaatgattgtaaa--tatgtctagtcagttatatg-aaactcaagtgtt 35537521  T
Q  140 gagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcgg----tcacattatcggctagtttccatattttagttac 225  Q
    |||||||| |  |||||||||||||  | ||  ||||||||| |||| ||||    ||| |||||| |||||||| |||||||| |||||    
T  35537522 gagtttgtacgaagacaagcaaatgtagttgttcatgaattatcaaaagcggtcaatcatattatcagctagttttcatattttggttac 35537611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 16906869 - 16906749
Alignment:
Q  93 atgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggt 192  Q
    |||||||||||||| | |||| |||  ||||||||||||| | ||| |||||| | | ||||||| |||||| ||  | ||||||| || |||||||  |    
T  16906869 atgattgtaaaactctatttagtcaaatttatgaaaactctaatgttgagtttttacggagacaaacaaatgaggtcgtccatgaactaacaaaggcaat 16906770  T
Q  193 cacattatcggctagtttcca 213  Q
    |||||||||  ||||||||||    
T  16906769 cacattatcatctagtttcca 16906749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 20491502 - 20491572
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcgg 191  Q
    ||||||||| |||| ||| |||||||| | |||||||||||||| || ||| ||| ||||||| |||||||    
T  20491502 ttatgaaaagtcgactgttgagtttgtacggagacaagcaaatgaggttgctcataaattagctaaggcgg 20491572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 42132196 - 42132237
Alignment:
Q  231 catattgtattgaacacattttaattaatgatatgctataag 272  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  42132196 catattgtattgaacacattttaaataatgaaatgatataag 42132237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 5213102 - 5213194
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    |||||||||||| |  ||||||||||| ||||||||| ||||||  || || ||||  ||||| |||||||  ||||| || |||||||||||    
T  5213102 ttatgaaaactctaaggtagagtttgtacagagacaatcaaatgaagcagctcatgctttagctaaggcggctacattgtcagctagtttcca 5213194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 299 - 488
Target Start/End: Original strand, 52663917 - 52664103
Alignment:
Q  299 tgagaaggatttaacataatgatattcgatctcttaaacagaataatatgagcattagttaatgatgctaaggagtgttttgagacactttataatggcc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||||||||    
T  52663917 tgagaaggatttaacataatgatattcgatctcttaaacagaataatatgagcattagttaatgatgataacgagtg--ttgagacactttataatggcc 52664014  T
Q  399 acaacaaaccagtttgttggagtcattttcctttgaggatttgttcgttccaagcctcaatactgtggacttcaatcacttttccttctt 488  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  52664015 acaacaaaccagtttgttggagtca-tttcccttgaggatttgttcgttccaagcctcaacactgtggacttcaatcacttgtccttctt 52664103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 634773 - 634962
Alignment:
Q  11 gagttcgaacttggttccaaaaaagtgattgatagctttggagttaataggcatgattcgatggaatttggagctattattaatgattgtaaaactttgt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  634773 gagttcgaacttgattccaaaaaagtggttgatagctttggagctaataggcatgattcgacggaatttggagctattattaatgactgtaaaactttgt 634872  T
Q  111 ttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattat 200  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  634873 ttaatcaattttatgaaaactcgagtgtagagtttgttcggagacaagcaaatgaggttgcccatgaattagcaaaggcggccacgttat 634962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 73 - 271
Target Start/End: Complemental strand, 17058930 - 17058732
Alignment:
Q  73 ggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcc 172  Q
    |||||||||||||||||||||||||||||||||||| ||||  || || ||||||||||| ||||| |||||||| | |||||||||||||| || |||     
T  17058930 ggaatttggagctattattaatgattgtaaaactttatttaggcaattatatgaaaactctagtgttgagtttgtgcggagacaagcaaatgaggttgct 17058831  T
Q  173 catgaattagcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataa 271  Q
    ||||| ||||||||||||  |||||| || ||||||||||| ||||| || | | ||||| ||||||||||||||||||||| |||||| |||||||||    
T  17058830 catgagttagcaaaggcgaccacattgtcagctagtttccaaattttggtcatgccaccaaattgtattgaacacattttaagtaatgaaatgctataa 17058732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 5561817 - 5561675
Alignment:
Q  71 atggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctg 170  Q
    ||||||| ||| |||||||| ||||| |||||| |  | |||| ||| | ||||||||| || ||||| |||||||| | |||||||||||||| || ||    
T  5561817 atggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagtattatgaaaattctagtgttgagtttgtacggagacaagcaaatgaggttg 5561718  T
Q  171 cccatgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    ||||| | ||||||||||||| |  ||| || |||||||||||    
T  5561717 cccataagttagcaaaggcggccctattgtcagctagtttcca 5561675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 27024171 - 27024098
Alignment:
Q  89 attaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaa 162  Q
    |||||| ||||||||||| | |||| | |||| ||||||||||| ||||| |||||||| | ||||||||||||    
T  27024171 attaataattgtaaaactctctttagtaatttctatgaaaactcaagtgttgagtttgtgcggagacaagcaaa 27024098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 27154951 - 27154894
Alignment:
Q  75 aatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactc 132  Q
    |||||||||||| |||||||||||||||| |||| |||| || | |||||||||||||    
T  27154951 aatttggagctactattaatgattgtaaatctttatttagtcgtatttatgaaaactc 27154894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 13503288 - 13503367
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccat 175  Q
    ||||||||||| | |||| ||| ||||||||||||||  |||| |||||||| | ||| |||||||||| || |||||||    
T  13503288 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccat 13503367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 42595722 - 42595620
Alignment:
Q  122 tatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttccatattttag 221  Q
    |||| |||||| ||||||||||||||   ||||||||||||||  ||| | ||| ||||| | ||||||| ||||||||| | |||||| || ||||| |    
T  42595722 tatggaaactcaagtgtagagtttgtgaggagacaagcaaatgaagctcctcataaattaactaaggcggccacattatcagttagttttcagatttttg 42595623  T
Q  222 tta 224  Q
    |||    
T  42595622 tta 42595620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 43640499 - 43640588
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagttt 210  Q
    |||||||||||| |  ||||||||||| | |||||||||||||| ||  || ||||  ||||| ||||||| |||||| || ||||||||    
T  43640499 ttatgaaaactctaaggtagagtttgtgcggagacaagcaaatgagggagctcatgctttagctaaggcggccacattgtcagctagttt 43640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 44328340 - 44328457
Alignment:
Q  74 gaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgccc 173  Q
    |||| ||| |||||||| ||||| |||||| |  | |||| ||| | |||||||||||| ||||| |||||| | |  ||||||||||||| || || ||    
T  44328340 gaatatggtgctattatcaatgaatgtaaatccgtatttagtcactattatgaaaactctagtgttgagtttttacgaagacaagcaaatgaggttgtcc 44328439  T
Q  174 atgaattagcaaaggcgg 191  Q
    || | |||||||||||||    
T  44328440 ataagttagcaaaggcgg 44328457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 24592174 - 24592090
Alignment:
Q  127 aaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttc 211  Q
    ||||||||| || || ||||| |||||||| ||||||  | | | |||| |||||||||||||||||| |||||| | |||||||    
T  24592174 aaactcgagagttgaatttgtacagagacatgcaaataagacagtccataaattagcaaaggcggtcatattatctgttagtttc 24592090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 7072690 - 7072512
Alignment:
Q  94 tgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtc 193  Q
    |||||||||| |||| ||||  || || ||||||||||| ||||| |||||||| ||||||||| |||||| || ||| ||||| ||||||||||||  |    
T  7072690 tgattgtaaatctttatttaggcaattatatgaaaactctagtgttgagtttgtgcagagacaatcaaatgaggttgctcatgagttagcaaaggcgacc 7072591  T
Q  194 acattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataag 272  Q
    ||||| || |||| |||||| ||||| || |   ||||| |||||||| |||||||||||| |||||| ||| ||||||    
T  7072590 acattgtcagctaatttccagattttggtcataccaccaaattgtattaaacacattttaaataatgaaatgttataag 7072512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 35220344 - 35220204
Alignment:
Q  73 ggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcc 172  Q
    ||||| ||| |||||||| ||||| |||||| |  | |||| ||| | |||||||||||| ||||| |||||||| | |||||||||||| | |  ||||    
T  35220344 ggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagtattatgaaaactctagtgttgagtttgtacggagacaagcaaacgagattgcc 35220245  T
Q  173 catgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    ||| | |||||||||| || |  ||| || |||||||||||    
T  35220244 cataagttagcaaaggtggccgtattgtcagctagtttcca 35220204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 24177678 - 24177757
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccat 175  Q
    ||||||||||| | |||| ||| ||||||||||||||  |||| |||||||| | ||| |||||||||| || |||||||    
T  24177678 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccat 24177757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 119 - 272
Target Start/End: Original strand, 45421591 - 45421744
Alignment:
Q  119 ttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttccatattt 218  Q
    |||||||||||||| ||||| |||||| |||  |||||||| |||| || ||||||||||||||| ||||||| | ||| ||| | ||||||||| |||     
T  45421591 ttttatgaaaactctagtgtggagtttattcgaagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagttagtttccagattc 45421690  T
Q  219 tagttacgtcaccatattgtattgaacacattttaattaatgatatgctataag 272  Q
    | ||||    |||||| ||||||||||||||||| |||||||| ||| ||||||    
T  45421691 tggttaatataccataatgtattgaacacattttgattaatgaaatgttataag 45421744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 13501511 - 13501618
Alignment:
Q  83 gctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattag 182  Q
    |||||||||||||| |||||| || | |||||||| | ||||||||| || ||||| |||||||| | |||||||||||||| || || |||| | ||||    
T  13501511 gctattattaatgaatgtaaatctgtatttaatcagtattatgaaaattctagtgttgagtttgtacggagacaagcaaatgaggttgtccataagttag 13501610  T
Q  183 caaaggcg 190  Q
    ||||||||    
T  13501611 caaaggcg 13501618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 264
Target Start/End: Complemental strand, 21485674 - 21485524
Alignment:
Q  114 atcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    ||||| ||||||||| ||| |||||||||||| |   | |||||| ||||| || || |||||||||||| ||||||||||||||||| |||||||| |     
T  21485674 atcatatttatgaaagctctagtgtagagtttataaggtgacaagtaaatgaggttgtccatgaattagctaaggcggtcacattatcagctagttttcg 21485575  T
Q  214 tatttt-agttacgtcaccatattgtattgaacacattttaattaatgatat 264  Q
     ||||| | | || | |||| ||||||||||||| ||||||| |||||||||    
T  21485574 aattttgattgacat-accaaattgtattgaacatattttaagtaatgatat 21485524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 32663667 - 32663735
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatg 164  Q
    ||||||||||| | ||||  |||| |||||||||||||| ||| |||||||| | ||||||||||||||    
T  32663667 attgtaaaactctctttagacattattatgaaaactcgactgttgagtttgtacggagacaagcaaatg 32663735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 17777963 - 17777916
Alignment:
Q  116 catttttatgaaaactcgagtgtagagtttgttcagagacaagcaaat 163  Q
    |||| |||||||||||||| |||||||||||| | |||||||||||||    
T  17777963 cattattatgaaaactcgactgtagagtttgtacggagacaagcaaat 17777916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 8943565 - 8943473
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    |||||||||||| |  ||||||||||| | |||||||||||||| | | || ||||  ||||| |||||||  ||||| || |||||||||||    
T  8943565 ttatgaaaactctaaggtagagtttgtgcggagacaagcaaatgagacagctcatgctttagctaaggcggctacattgtcagctagtttcca 8943473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 53708255 - 53708163
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    |||||||||||| |  ||||||||||| | |||||||||||||| ||| || ||||  ||||| |||| ||  |||||||| | |||||||||    
T  53708255 ttatgaaaactctaaggtagagtttgtgcggagacaagcaaatgaggcagctcatgctttagctaaggtggctacattatcagttagtttcca 53708163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 39118134 - 39118032
Alignment:
Q  175 tgaattagcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggt 274  Q
    ||||||||||||| |||||||||||||   ||||||||||||||| ||||  |||||| ||| ||||||||||||||| |||||||| ||| |||||| |    
T  39118134 tgaattagcaaagacggtcacattatcaattagtttccatattttggttagttcaccaaattttattgaacacattttgattaatgaaatgttataagtt 39118035  T
Q  275 ttc 277  Q
    |||    
T  39118034 ttc 39118032  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 4424776 - 4424636
Alignment:
Q  73 ggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcc 172  Q
    ||||| ||| |||||||| ||||| |||||| |  | |||| ||| | |||| ||||||| ||||| |||||||| | |||||||||||||| || ||||    
T  4424776 ggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagtattataaaaactctagtgttgagtttgtacggagacaagcaaatgaggttgcc 4424677  T
Q  173 catgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    ||| | |||||||||| || |  ||| || |||||||||||    
T  4424676 cataagttagcaaaggtggccctattgtcagctagtttcca 4424636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 10543938 - 10544032
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcg 190  Q
    ||||||||||| | ||||  |||| |||||||||||||| ||| |||||||| | |||||||||||||| || ||  ||| ||||||| ||||||    
T  10543938 attgtaaaactctctttatgcattattatgaaaactcgactgttgagtttgtacggagacaagcaaatgaggttgttcataaattagctaaggcg 10544032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 26381417 - 26381325
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    |||||||||||| |  ||||||||||| | |||||||||||||| ||| || ||||  ||| | |||||||  ||||| || |||||||||||    
T  26381417 ttatgaaaactctaaggtagagtttgtacggagacaagcaaatgaggcagctcatgctttatctaaggcggctacattgtcagctagtttcca 26381325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 33535581 - 33535481
Alignment:
Q  110 tttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtt 209  Q
    |||||| || ||||| ||||||| |||||  |||||||| ||||| || |||| | || ||||||||||||||  |||||||  | |||||||| |||||    
T  33535581 tttaattatctttataaaaactctagtgtcaagtttgttaagagataaacaaaagaggttgcccatgaattagttaaggcggctaaattatcggttagtt 33535482  T
Q  210 t 210  Q
    |    
T  33535481 t 33535481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 24062713 - 24062577
Alignment:
Q  73 ggaatttggagctattattaatgattgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcc 172  Q
    |||||||||| ||||  | || ||||||||| || |  |||||| ||||||||||||||  ||||| ||||| || | |||||||||||||| || ||||    
T  24062713 ggaatttggatctatcttgaaagattgtaaatctctagttaatcgtttttatgaaaactgtagtgttgagtt-gtgcggagacaagcaaatgaggttgcc 24062615  T
Q  173 catgaattagcaaaggcggtcacattatcggctagttt 210  Q
    ||  ||||| ||||||||| |||||| ||| |||||||    
T  24062614 caccaattatcaaaggcggccacattgtcgactagttt 24062577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 21504983 - 21505062
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccat 175  Q
    ||||||||||| | |||| ||| ||||||||||||||  |||| |||||||| | ||| |||||||||| || |||||||    
T  21504983 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccat 21505062  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 258
Target Start/End: Complemental strand, 4648651 - 4648514
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttccatatttta 220  Q
    |||||||||||| ||||| |  ||||| |||  ||||||||||  || ||||||||| |||||  |||||||| |||||||   |||||| ||||| ||     
T  4648651 ttatgaaaactctagtgtgggttttgtgcagtaacaagcaaatacggttgcccatgagttagcttaggcggtcccattatcacttagttttcatatattg 4648552  T
Q  221 gttacgtcaccatattgtattgaacacattttaattaa 258  Q
    ||||    |||| ||||||||||||| ||||| |||||    
T  4648551 gttaacaaaccaaattgtattgaacatattttgattaa 4648514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 11567648 - 11567556
Alignment:
Q  121 ttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccatgaattagcaaaggcggtcacattatcggctagtttcca 213  Q
    |||||||||||| |   |||||||||| |||||||||||||||| | | || ||||  ||||| |||||||  ||||| || |||||||||||    
T  11567648 ttatgaaaactctaagatagagtttgtgcagagacaagcaaatgagacagctcatgctttagctaaggcggctacattgtcagctagtttcca 11567556  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 203275 - 203196
Alignment:
Q  96 attgtaaaactttgtttaatcatttttatgaaaactcgagtgtagagtttgttcagagacaagcaaatggggctgcccat 175  Q
    ||||||||||| | |||| ||| ||||||||||||||  |||| |||||||| | ||| |||||||||| || |||||||    
T  203275 attgtaaaactctctttagtcaattttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccat 203196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 52202 - 52168
Alignment:
Q  238 tattgaacacattttaattaatgatatgctataag 272  Q
    ||||||||||||||||| |||||||||||||||||    
T  52202 tattgaacacattttaagtaatgatatgctataag 52168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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