View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6046_high_16 (Length: 440)
Name: NF6046_high_16
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 38841549 - 38841153
Alignment:
| Q |
16 |
tcaaaatctatgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatcttcgatgagattctccttgacgcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
38841549 |
tcaaaatctatgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatctttgacgagattctccttgacgcc |
38841450 |
T |
|
| Q |
116 |
accaagagagatccgtccatggattcactcaaagttacaatcgaaccggaagtgaatacagtttcagtttataataatggtgacagtgttccagtagggc |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38841449 |
accaagagagatccgtccatggattcgctcaaagttacaatcgaaccggaagggaatacagtttcagtttataataatggtgaaggtgttccagtagggc |
38841350 |
T |
|
| Q |
216 |
ttcataaggaagagaatgtttatgttcctgaattgttctttggtcaccttaactatgattataatgtgaagaaaactactggtgggagaaatggttatgg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38841349 |
ttcataaggaagagaatgtttatgttcctgaattgttctttggtcaccttaactatgattataatgtgaagaaaactactggtgggagaaatggttatgg |
38841250 |
T |
|
| Q |
316 |
tgctaagctcaccaatattttttcgaaggagtttgttattgagattgttgatggacgtcgtttgaagaagtataagcaggtagtgatttgttgattt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38841249 |
tgctaagctcaccaatattttttcgaaggagtttgttattgagattgttgatggacgtcgtttgaagaagtataagcaggtagtgatttgttgattt |
38841153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 9877639 - 9877231
Alignment:
| Q |
16 |
tcaaaatctatgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatcttcgatgagattctccttgacgc- |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| || || ||||| |||||||| ||||||||| | | || |
|
|
| T |
9877639 |
tcaaaatctatgggtttacgaaaacgaagaaatggttaaccgttcaatctcctacgttcccggtctctacaagatcttcgacgagattctcgtcaatgct |
9877540 |
T |
|
| Q |
115 |
--------caccaagagagatccgtccatggattcactcaaagttacaatcgaaccggaagtgaatacagtttcagtttataataatggtgacagtgttc |
206 |
Q |
| |
|
|| || ||||||| ||||||||||| | ||||| || ||||| || || | |||||| ||||| ||||| ||||| |||||| |||||| |
|
|
| T |
9877539 |
gctgataacaaacagcgagatccatccatggattcgttgaaagtaacgatcgatcctgaggcgaatacggtttctgtttacaataacggtgacggtgttc |
9877440 |
T |
|
| Q |
207 |
cagtagggcttcataaggaagagaatgtttatgttcctgaattgttctttggtcacctt------------aactatgattataatgtgaagaaaactac |
294 |
Q |
| |
|
| || | | ||||| | |||||||| ||||||||||| || ||| | |||||||| ||| || ||||| ||||||||||||||||||| |
|
|
| T |
9877439 |
cggttgagattcatcaagaagagaaggtttatgttccggagttgatttttggtcatcttcttacgagtagtaattatgacgataatgtgaagaaaactac |
9877340 |
T |
|
| Q |
295 |
tggtgggagaaatggttatggtgctaagctcaccaatattttttcgaaggagtttgttattgagattgttgatggacgtcgtttgaagaagtataagcag |
394 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| |||| |||||||||||||| | || ||||||||| | |||||||||||||||||| |
|
|
| T |
9877339 |
tggtggaagaaacggttatggtgctaagctcacgaatattttctcgactgagtttgttattgaaactgctgatggacggaggttgaagaagtataagcag |
9877240 |
T |
|
| Q |
395 |
gtagtgatt |
403 |
Q |
| |
|
||||||||| |
|
|
| T |
9877239 |
gtagtgatt |
9877231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University