View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_17 (Length: 436)
Name: NF6046_high_17
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 45651406 - 45651821
Alignment:
| Q |
13 |
aatatatcactttcttttaaattaaatgctgaggatggacaaaaaatatgagtttggttagatcacctcagatatttgagggtctacttccaaggacata |
112 |
Q |
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| T |
45651406 |
aatatatcactttcttttaaattaaatgctgaggatggacaaaaaatatgagtttggttagatcacctcagatatttgagggtctacttccaaggacata |
45651505 |
T |
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| Q |
113 |
gannnnnnnnaaagaattccaagagagatagatagaaaatatatgttacacactatatagaatatagatcactttctctacctttgtcttttgtgagtga |
212 |
Q |
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| T |
45651506 |
gattttttttaaagaattccaagagagatagatagaaaatatatgttacacactatatagaatatagatcactttctctaactttgtcttttgtgagtga |
45651605 |
T |
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| Q |
213 |
ttattgttattgacggcgagtttatagttggtctatgtttgaaacaaacaaaaggaaa-------tnnnnnnnnntgagaaatgaatgaaaatacatagt |
305 |
Q |
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| T |
45651606 |
ttattgttattgacggcgagtttatagttggtctatgtttgaaacaaacaaaaggaaaaaaaaataaaaaaaaattgagaaatgaatgaaaatacatagt |
45651705 |
T |
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| Q |
306 |
act-gtggttattaatatttgcatcattttcagaaataatttatttatttcttctcactttgtcgttctacttgttttcatgctttctcttacgtgttta |
404 |
Q |
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||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45651706 |
actagtggttattaatagttgcgtcattttcagaaataatttatttatttcttctcactttgtcgttctacttgttttcatgctttctcttacgtgttta |
45651805 |
T |
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| Q |
405 |
ggtaaacactatgtgt |
420 |
Q |
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| T |
45651806 |
ggtaaacactatgtgt |
45651821 |
T |
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