View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6046_high_18 (Length: 410)
Name: NF6046_high_18
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 31389121 - 31389500
Alignment:
| Q |
18 |
atcaaatattggtgatagcatccccccaccatatctcttcctatacaagaccatagcacaaccacataaatacttgtgatgccaaatatttcatac-tca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31389121 |
atcaaatattggtgatagcatccccccaccatatctcttcctatacaagaccatagcacaaccacataaatacttgtgatgccaaatatttcatacctca |
31389220 |
T |
|
| Q |
117 |
aaatgcagtttcattagcctatctactcatcacatgccacatgtcactacatgcataattagccacatatctataattgctatatctcattcccactctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31389221 |
aaatgcagtttcattagcctatctactcatcacatgccacatgtcactacatgcataattagccacatatctataattgctatatctcattcccactctc |
31389320 |
T |
|
| Q |
217 |
nnnnnnncaatgcaataacaaaacaacatcctcatcaaaacttttcaacataannnnnnnnncagccatggaaactagtatagcatgttactccagtggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31389321 |
tttttttcaatgcaataacaaaacaacatcctcatcaaaacttttcaacataatttttttttcagccatggaaactagtatagcatgttactccagtggt |
31389420 |
T |
|
| Q |
317 |
gcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccctcttctgccttcagggtatgtactatagt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31389421 |
gcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccctcttctgccttcagggtatgtacaatagt |
31389500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University