View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6046_high_19 (Length: 409)
Name: NF6046_high_19
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 34952788 - 34952499
Alignment:
| Q |
17 |
acatacaagatgttggagaaaatcaaatgattcatttgtatattatatataatttataaaatataaaggactaaaaggaatctttagataaaagcaaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34952788 |
acatacaagatgttggagaaaatcaaatgattcatttgtatattatatataatttataaaatataaaggactaaaaggaatctttagataaaagcaaaat |
34952689 |
T |
|
| Q |
117 |
gtctctttagataaatactaccat-atttcataaattcaagtnnnnnnnnnnnncaaatatagttcccaaccataattactcaagt-nnnnnnngcaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||| |||||||| |||||| |
|
|
| T |
34952688 |
gtctctttagataaatactaccataatttcataaattcaag----caaaaaagacaaatatagttcacagccataataactcaagtaaaaaaaagcaaaa |
34952593 |
T |
|
| Q |
215 |
tgcctctttagagagatattttaaccatgaaagaaaaagaaaaacatatatatctttggatttactagttcactaccataagtgcataatttgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34952592 |
tgcctctttagagagatattttaaccatgaaagaaaaagaaaaacatatatatctttggatttactagttcactaccataagtgcataatttgt |
34952499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University