View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_high_20 (Length: 402)

Name: NF6046_high_20
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_high_20
NF6046_high_20
[»] chr8 (2 HSPs)
chr8 (1-394)||(32527282-32527683)
chr8 (280-336)||(32148029-32148085)
[»] chr4 (4 HSPs)
chr4 (80-394)||(28391678-28392001)
chr4 (1-175)||(1543589-1543763)
chr4 (1-84)||(28393435-28393518)
chr4 (255-335)||(25430633-25430713)
[»] chr1 (7 HSPs)
chr1 (91-394)||(6836993-6837297)
chr1 (1-175)||(26403222-26403396)
chr1 (236-394)||(8975699-8975858)
chr1 (1-60)||(6834776-6834835)
chr1 (236-308)||(8975598-8975670)
chr1 (238-394)||(6386352-6386507)
chr1 (101-193)||(6386549-6386642)
[»] chr6 (1 HSPs)
chr6 (1-175)||(7036293-7036467)
[»] chr5 (2 HSPs)
chr5 (1-175)||(17795711-17795885)
chr5 (255-335)||(20332070-20332150)
[»] chr3 (1 HSPs)
chr3 (295-377)||(2804048-2804130)
[»] chr2 (1 HSPs)
chr2 (1-354)||(43371910-43372274)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 32527683 - 32527282
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccaacaggctcacaaacagcaatgttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  32527683 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccagcaggctcacaaacagcaatgttgca 32527584  T
Q  101 tctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcccaatcttcaatgttctcatcaattttttctaag 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527583 tctttgataaacatcagaaagtaatcttgtgcccctgacaggaacatcatctaccatttcattttcccaatcttcaatgttctcatcaattttttctaag 32527484  T
Q  201 gtaggaacctggagttt--------tggaaattacctccatctcctttgtgtcatcccagttccactcttcatcttccataaaatgcacatctctactta 292  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527483 gtaggaacctggagttttggagttttggaaattacctccatctcctttgtgtcatcccagttccactcttcatcttccataaaatgcacatctctactta 32527384  T
Q  293 caataattttatcattttgtggttggaaaattttataagcttttgcaacggagctgtggccaataaaaatgcctggaagagctcttctgtctggttcatc 392  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||    
T  32527383 caataattttaccattttgtggctggaaaattttataagcttttgcaacggagctgtagccaataaaaatgcctggaagagctcttctgtctagtttatc 32527284  T
Q  393 tc 394  Q
    ||    
T  32527283 tc 32527282  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 32148085 - 32148029
Alignment:
Q  280 acatctctacttacaataattttatcattttgtggttggaaaattttataagctttt 336  Q
    |||||||| ||||||| ||||||  ||||||| |||||||||| | |||||||||||    
T  32148085 acatctctgcttacaagaatttttccattttgaggttggaaaactctataagctttt 32148029  T

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Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 80 - 394
Target Start/End: Complemental strand, 28392001 - 28391678
Alignment:
Q  80 ctcacaaacagcaatgttgcttctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcccaatcttcaatg 179  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28392001 ctcacaaacaacaatgttgcatctttgataaacatcataaagtaatcttgtgcccctgacaggaacttcatctaccatttcattttcccaatcttcaatg 28391902  T
Q  180 ttctcatcaattttttctaaggtaggaacctggagttttgga--------aattacctccatctccttt-gtgtcatcccagttccactcttcatcttcc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28391901 ttctcatcaattttttctaaggtaggaacctggagttttggagttttgaaaattacctccatctccttttgtgtcatcccagttccactcttcatcttcc 28391802  T
Q  271 ataaaatgcacatctctacttacaataattttatcattttgtggttggaaaattttataagcttttgcaacggagctgtggccaataaaaatgcctggaa 370  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28391801 ataaaatgcacatctctacttacaataattttaccattttgtggttggaaaattttataagcttttgcaacggagctgtagccaataaaaatgcctggaa 28391702  T
Q  371 gagctcttctgtctggttcatctc 394  Q
    |||||||||||||| ||| |||||    
T  28391701 gagctcttctgtctagtttatctc 28391678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 1543763 - 1543589
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccaacaggctcacaaacagcaatgttgct 100  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||  ||||||||||||||| |  ||| || ||||||||||||||||||||||||     
T  1543763 ttttctctatcatgtgcagctcctccttcattgcaaccatccattttcgatcaagttttgcttcattgaaatcagcaggctcacaaacagcaatgttgca 1543664  T
Q  101 tctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcccaatcttc 175  Q
    ||||| |||||||||| |||||||||| || || ||||  |||| |||||| ||||| ||||||| |||||||||    
T  1543663 tctttcataaacatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttc 1543589  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28393518 - 28393435
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccaacaggctcac 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28393518 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccagcaggctcac 28393435  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 25430713 - 25430633
Alignment:
Q  255 ccactcttcatcttccataaaatgcacatctctacttacaataattttatcattttgtggttggaaaattttataagcttt 335  Q
    ||||| |||||||||||| || ||||||||||||||||| | || |||  || |||| ||||| |||||||||||||||||    
T  25430713 ccacttttcatcttccatgaagtgcacatctctacttaccaaaaattttccactttgaggttgaaaaattttataagcttt 25430633  T

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Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 91 - 394
Target Start/End: Original strand, 6836993 - 6837297
Alignment:
Q  91 caatgttgcttctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcccaatcttcaatgttctcatcaat 190  Q
    ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6836993 caatgttgcatctttgataaacatcagaaagtaatcttgtgcctctgacaggaacgtcatctaccatttcattttcccaatcttcaatgttttcatcaat 6837092  T
Q  191 tttttctaaggtaggaacctggagttttggaaattacctccatctcctttgtgtcatcccagttccactcttcatcttccataaaatgcacatctctact 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6837093 tttttctaaggtaggaacctggagttttggaaattacctccatctcatttgtgtcatcccagttccactcttcatcttctataaaatgcacatctctact 6837192  T
Q  291 tacaataattttatcattttgtggttggaaaa-ttttataagcttttgcaacggagctgtggccaataaaaatgcctggaagagctcttctgtctggttc 389  Q
    ||||||||||||| |||||| ||| ||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |||     
T  6837193 tacaataattttaccattttatggctggaaaatttttataagcttttgcaatggagttgtagccaataaaaatgcctggaagagctcttctgtctagttt 6837292  T
Q  390 atctc 394  Q
    |||||    
T  6837293 atctc 6837297  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 26403396 - 26403222
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccaacaggctcacaaacagcaatgttgct 100  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||  ||||||||||||||| |  ||| || ||||||||||||||||||||||||     
T  26403396 ttttctctatcatgtgcagctcctccttcattgcaaccatccattttcgatcaagttttgcttcattgaaatcagcaggctcacaaacagcaatgttgca 26403297  T
Q  101 tctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcccaatcttc 175  Q
    ||||| |||||||||| |||||||||| || || ||||  |||| |||||| ||||| ||||||| |||||||||    
T  26403296 tctttcataaacatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttc 26403222  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 394
Target Start/End: Original strand, 8975699 - 8975858
Alignment:
Q  236 cctttgtgtcatcccagttccactcttcatcttccataaaa-tgcacatctctacttacaataattttatcattttgtggttggaaaattttataagctt 334  Q
    |||||||||||||||| | | ||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||  |||||| ||| ||| |||    
T  8975699 cctttgtgtcatcccattcctactctccatcttccataaaaatgcacatctctccttacaataattttaccattttgtggcgggaaaactttgtaaactt 8975798  T
Q  335 ttgcaacggagctgtggccaataaaaatgcctggaagagctcttctgtctggttcatctc 394  Q
    ||| ||||| | ||| |||||||||||  |||||||||||| || ||||| ||| |||||    
T  8975799 ttgaaacggcgttgtagccaataaaaactcctggaagagctattttgtctagtttatctc 8975858  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6834776 - 6834835
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttg 60  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  6834776 ttttctcaatcatgtacaactcctccttcattgcaaccatccaatttttatgaagttttg 6834835  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 8975670 - 8975598
Alignment:
Q  236 cctttgtgtcatcccagttccactcttcatcttccataaaatgcacatctctacttacaataattttatcatt 308  Q
    |||||||||||||||| |  |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  8975670 cctttgtgtcatcccattcgcactctccatcttccataaaatgcacatctctgcttacaataattttaccatt 8975598  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 6386507 - 6386352
Alignment:
Q  238 tttgtgtcatcccagttccactcttcatcttccataaaatgcacatctctacttacaataattttatcattttgtggttggaaaattttataagcttttg 337  Q
    ||||||||||||   ||||||| || |||||||||||| | ||||| ||| | || ||||||||||  |||||| || | |||| |||||||||||||||    
T  6386507 tttgtgtcatcctgattccacttttaatcttccataaatttcacatatctgcctataataattttacaattttgcggctagaaatttttataagcttttg 6386408  T
Q  338 caacggagctgtggccaataaaaatgcctggaagagctcttctgtctggttcatctc 394  Q
    |||| ||| ||| ||| | |||| ||| | |||| |||||| ||||| ||| |||||    
T  6386407 caacagagttgtagccga-aaaactgcatagaagggctcttttgtctagtttatctc 6386352  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 6386642 - 6386549
Alignment:
Q  101 tctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtc-atctaccatttcattttcccaatcttcaatgttctcatcaatttt 193  Q
    |||| ||||||||||  |||||| ||||||||| || ||||||| ||| ||||||||||||| |||||| || |||| || | ||||| |||||    
T  6386642 tcttcgataaacatccaaaagtagtcttgtgcctctcacaggaatgtccatctaccatttcaatttccctattttcattgctttcatctatttt 6386549  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 7036467 - 7036293
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccaacaggctcacaaacagcaatgttgct 100  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||  ||||||||||||||| |  ||| || ||||||||||||||||||||||||     
T  7036467 ttttctctatcatgtgcagctcctccttcattgcaaccatccattttcgatcaagttttgcttcattgaaatcagcaggctcacaaacagcaatgttgca 7036368  T
Q  101 tctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcccaatcttc 175  Q
    ||||| |||||||||| |||||||||| || || ||||  |||| |||||| ||||| ||||||| |||||||||    
T  7036367 tctttcataaacatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttc 7036293  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 17795885 - 17795711
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaaccatccaatttttatcaagttttgcttcttcaaaaccaacaggctcacaaacagcaatgttgct 100  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||  ||||||||||||||| |  ||| || ||||||||||||||||||||||||     
T  17795885 ttttctctatcatgtgcagctcctccttcattgcaaccatccattttcgatcaagttttgcttcattgaaatcagcaggctcacaaacagcaatgttgca 17795786  T
Q  101 tctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcccaatcttc 175  Q
    ||||| |||||||||| |||||||||| || || ||||  |||| |||||| ||||| ||||||| |||||||||    
T  17795785 tctttcataaacatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttc 17795711  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 20332070 - 20332150
Alignment:
Q  255 ccactcttcatcttccataaaatgcacatctctacttacaataattttatcattttgtggttggaaaattttataagcttt 335  Q
    ||||| |||||||||||| || ||||||||||||||||| | || |||  || |||| ||||| |||||||||||||||||    
T  20332070 ccacttttcatcttccatgaagtgcacatctctacttaccaaaaattttccactttgaggttgaaaaattttataagcttt 20332150  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 2804130 - 2804048
Alignment:
Q  295 ataattttatcattttgtggttggaaaattttataagcttttgcaacggagctgtggccaataaaaatgcctggaagagctct 377  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  2804130 ataattttaccattttgtggctggaaaattttataagcttttgcaacggagctgtagccaataaaaataccttgaagagctct 2804048  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43372274 - 43371910
Alignment:
Q  1 ttttctcaatcatgtgcaactcctccttcattgcaa---ccatccaatttttatcaagttttgcttcttcaaaaccaacaggctcacaaacagcaatgtt 97  Q
    |||||||||||| |||||  | ||||||| ||||||   ||||||| |||| |||| |||||||||||  |||||||  ||||| ||||||| || ||||    
T  43372274 ttttctcaatcacgtgcagttactccttcgttgcaattaccatccagtttt-atcatgttttgcttctctaaaaccagtaggctaacaaacaacagtgtt 43372176  T
Q  98 gcttctttgataaacatcataaagtaatcttgtgcccctgacaggaacgtcatctaccatttcattttcc--caatcttcaatgttctcatcaatttttt 195  Q
    || |||||||||||||||| |||||| | ||||| |||| ||| ||||||||| || |||||||||||    | ||||| || | ||||| ||||||| |    
T  43372175 gcatctttgataaacatcagaaagtagtattgtgtccctaacatgaacgtcatataacatttcattttttttcgatctttaacgctctcaccaattttgt 43372076  T
Q  196 ctaaggtaggaacctggagt-------tttggaaa-ttacctccatctcctttgtgtcatcccagttccactcttcatcttccataaaatgcacatctct 287  Q
    | ||| |||||| |||||||       |||||||| ||  | ||||||| |||||| ||||||  |||| |||||||  |||| |||||||||  |||||    
T  43372075 ccaagataggaaactggagttttgacttttggaaatttgtccccatctcttttgtgccatcccgcttcccctcttcacattccttaaaatgcatgtctct 43371976  T
Q  288 acttacaataattttatcattttgtggttggaaaattttataagcttttgcaacggagctgtggcca 354  Q
    ||||||||||||| || || ||||| |    |||||| |||||||||||||||| ||| ||| ||||    
T  43371975 acttacaataattctaccactttgtag-ccaaaaattatataagcttttgcaactgagttgtagcca 43371910  T

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