View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_22 (Length: 390)
Name: NF6046_high_22
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_22 |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 102 - 390
Target Start/End: Complemental strand, 48279190 - 48278907
Alignment:
| Q |
102 |
gggatcagaatcaaacgaaagaaatggagtaccaaccgttccgcgtggaaaagaatgatcatgatgaagggttgtcatat-gttacgcttttaggttccc |
200 |
Q |
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||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |
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| T |
48279190 |
gggatcaaaataaaacgaaagaaatggagtactaaccgttccgcgtggaaaagaatgatcatgatgaagggttgtcatattgttgcgcttttaggtttcc |
48279091 |
T |
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| Q |
201 |
caatagaaaacatagtctacacttatgaagcacatacacatacacacacatcgataccagacataataatgacacatcaataaatttattgaacataatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
48279090 |
caatagaaaacatagtctacacttatgaagcacatacacataca------tcgataccagacacagtaatgacacataaataaatttattgaacataatc |
48278997 |
T |
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| Q |
301 |
aaatgtgtaggtgtcagacatcaacatacatctgatatgttacacgccattcattaaaaataaattatgtgcaataaacattattcacaa |
390 |
Q |
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| T |
48278996 |
aaatgtgtaggtgtcagacatcaacatacatccgatatgttacacgccattcattaaaagtaaattctgtgcaataaacattattcacaa |
48278907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 48279284 - 48279244
Alignment:
| Q |
7 |
tcgaagaatatgttaacaattctctaaaaaattcagagacta |
48 |
Q |
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| T |
48279284 |
tcgaaaaatatgttaacaattctctaaaaaatt-agagacta |
48279244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 102 - 390
Target Start/End: Complemental strand, 40388691 - 40388410
Alignment:
| Q |
102 |
gggatcagaatcaaacgaaagaaatggagtaccaaccgttccgcgtggaaaagaatgatcatgatgaagggttgtcatat-gttacgcttttaggttccc |
200 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
40388691 |
gggatcagaataaaacgaaagaaatggagtactaaccgttccgtgtggaaaagaatgatcatggtgaagggttgtcatattgttgcgcttttaggttccc |
40388592 |
T |
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| Q |
201 |
caatagaaaacatagtctacacttatgaagcacatacacatacacacacatcgataccagacataataatgacacatcaataaatttattgaacataatc |
300 |
Q |
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| T |
40388591 |
caataggaaacatagtctacacttatgaagcacatacatatacaca------gatacgagacacaataatgacaca--aataaatttattgaacataatc |
40388500 |
T |
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| Q |
301 |
aaatgtgtaggtgtcagacatcaacatacatctgatatgttacacgccattcattaaaaataaattatgtgcaataaacattattcacaa |
390 |
Q |
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| T |
40388499 |
aaatgtgtaggtgtcagacatcaacatacatccgatatgttacacgccattcattaaaaatatattctgtgcaataaacattattcacaa |
40388410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 102 - 387
Target Start/End: Complemental strand, 29633102 - 29632821
Alignment:
| Q |
102 |
gggatcagaatcaaacgaaagaaatggagtaccaaccgttccgcgtggaaaagaatgatcatgatgaagggttgtcatat-gttacgcttttaggttccc |
200 |
Q |
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||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
29633102 |
gggattagaataaaacgaaagaaatggagtactaaccgttccgcgtggaaaagaatgatcatggtgaagggttgtcatattgttgcgcttttaggttccc |
29633003 |
T |
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| Q |
201 |
caatagaaaacatagtctacacttatgaa-gcacatacacatacacacacatcgataccagacataataatgacacatcaataaatttattgaacataat |
299 |
Q |
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| T |
29633002 |
caacagaaaacatagtctacacttatgaaagcacatacacatacac------cgataccatacacaataatgacacataaataaatttattgaacataat |
29632909 |
T |
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| Q |
300 |
caaatgtgtaggtgtcagacatcaacatacatctgatatgttacacgccattcattaaaaataaattatgtgcaataaacattattca |
387 |
Q |
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| T |
29632908 |
caaatgtgtaggtgtcagacatcaacatacatcatatatgttacacgccattcattaaaagtaaattctgtgcaataaacattattca |
29632821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 29633197 - 29633156
Alignment:
| Q |
7 |
tcgaagaatatgttaacaattctctaaaaaattcagagacta |
48 |
Q |
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| T |
29633197 |
tcgaaaaatatgttaacaattctctaaaaaattcagagacta |
29633156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 40388786 - 40388745
Alignment:
| Q |
7 |
tcgaagaatatgttaacaattctctaaaaaattcagagacta |
48 |
Q |
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| T |
40388786 |
tcgaaaaatatgttaaccattctctaaaaaattcagagacta |
40388745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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