View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_27 (Length: 341)
Name: NF6046_high_27
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_27 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 147 - 341
Target Start/End: Original strand, 7623691 - 7623881
Alignment:
| Q |
147 |
tttattctcttatataaaattcgaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
246 |
Q |
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| T |
7623691 |
tttattctcttagataaaattcaaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
7623790 |
T |
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| Q |
247 |
ttgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactttgttggagaagagatgaactgaggagattttt |
341 |
Q |
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| T |
7623791 |
ttgagaaaatgatattaat----taactaacctgacgcaagtgtttgaattcttccatgactttgttggagaagagatgaacggaggagattttt |
7623881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 7623391 - 7623530
Alignment:
| Q |
10 |
attatactcaagtcaatataaccaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
109 |
Q |
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| T |
7623391 |
attatactcaagtcaatataagcaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
7623490 |
T |
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| Q |
110 |
gaatactatatttttaatttaattttctgggaagattttt |
149 |
Q |
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| T |
7623491 |
gaatactatatttttaatttaattttctcggaagattttt |
7623530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 7659908 - 7659804
Alignment:
| Q |
237 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactttgttggagaagagatgaactgaggaga |
336 |
Q |
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| T |
7659908 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactttgtttgagaagagatgaactgaggaga |
7659809 |
T |
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| Q |
337 |
ttttt |
341 |
Q |
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||||| |
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| T |
7659808 |
ttttt |
7659804 |
T |
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