View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_high_3 (Length: 656)

Name: NF6046_high_3
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_high_3
NF6046_high_3
[»] chr5 (1 HSPs)
chr5 (13-638)||(11697338-11697963)


Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 13 - 638
Target Start/End: Original strand, 11697338 - 11697963
Alignment:
Q  13 aaaattagccgaaagaaacttggtacaaacacccgggtttagtttaattgaagcaaagaggaaagtgtacaagtttgtttcacaagacaagtctatacct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11697338 aaaattagccgaaagaaacttggtacaaacacccgggtttagtttaattgaagcaaagaggaaagtgtacaagtttgtttcacaagacaagtctatacct 11697437  T
Q  113 caatggaacataatctatgagatgattcaccaaatggaatggcagttgaaatttgaagggtacataccagatacatcacaagttttgctcgatgtagacg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11697438 caatggaacataatctatgagatgattcaccaaatggaatggcagttgaaatttgaagggtacataccagatacatcacaagttttgctcgatgtagacg 11697537  T
Q  213 atgaagaaaagaaagagagattgaaatttcatagtcagaagttagcaattgcttttggactcatacatacatctgagggttctcctttaataataacaag 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11697538 atgaagaaaagaaagagagattgaaatttcatagtcagaagttagcaattgcttttggactcatacatacatctgagggttctcctttaagaataacaag 11697637  T
Q  313 aaatcttaggatgtgtagtgactgtcatacttacactaaatacatttccatgatctatgaaagggaaattactgtaagagatcgtcttcgtttccaccat 412  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11697638 aaatcttaggatgtgtagtgactgtcatacttacactaaatatatttccatgatctatgaaagggaaattactgtaagagatcgtcttcgtttccaccat 11697737  T
Q  413 tttaaaaatggaagttgttcatgtaaagattactggtgaatttcattatgtttatgattattttgttcttaaggttcctttagaaattaagggtggtatt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11697738 tttaaaaatggaagttgttcatgtaaagattactggtgaatttcattatgtttatgattattttgttcttaaggttcctttagaaattaagggtggtatt 11697837  T
Q  513 ttcctgtctcaattcaaatttctcgtacccatttgttattgttgttatatccttatattttcactgaagaaaataaaaaacaacggtatttcattgctaa 612  Q
    |||||||||||||||| |||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11697838 ttcctgtctcaattcacatttcttgtacacatttgttatttttgttatgtccttatattttcactgaagaaaataaaaaacaacggtctttcattgctaa 11697937  T
Q  613 tctaaaaagaattaatcttctgcact 638  Q
    ||||||||||||||||||||||||||    
T  11697938 tctaaaaagaattaatcttctgcact 11697963  T

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