View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_high_30 (Length: 320)

Name: NF6046_high_30
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_high_30
NF6046_high_30
[»] chr4 (1 HSPs)
chr4 (9-302)||(48270380-48270673)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 48270380 - 48270673
Alignment:
Q  9 acatcatcaccatcttatatgtttggggatatgcaggattctccaaactcagtttttggctatcaggatctttggaatatacaacaaggtaccttctttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48270380 acatcatcaccatcttatatgtttggggatatgcaggattctccaaactcagtttttggctatcaggatctttggaatatacaacaaggtaccttctttc 48270479  T
Q  109 caccttatgtactgagcaaacctacattggagaaagaaacctatttttataaggattactttggtgaaaatccaggaacctacaagaaatcaaatttaga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48270480 caccttatgtactgagcaaacctacattggagaaagaaacctatttttataaggattactttggtgaaaatccaggaacctacaagaaatcaaatttaga 48270579  T
Q  209 tgcacaattggatggcaacctctacgagtcattcaaacagaatttaaattttgaaaatggttggtgtgacaaaggtgcgcaaattgttagtcta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48270580 tgcacaattggatggcaacctctacgagtcattcaaacagaatttaaattttgaaaatggttggtgtgacaaaggttcgcaaattgttagtcta 48270673  T

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