View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_31 (Length: 320)
Name: NF6046_high_31
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_31 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0141 (1 HSPs) |
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| [»] scaffold0313 (1 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 25021356 - 25021676
Alignment:
| Q |
10 |
aagaatattccttaatttgacatggagtcatgttttttatttgttgttgagtatataggaataacatccaaaaatatggagataaaaaatatttggtttt |
109 |
Q |
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| T |
25021356 |
aagaatattccttaatttgacatggagtcatgttttttatttgttgttgcgtatataggaataacatccaaaaatatggagataaaaaatatttggtttt |
25021455 |
T |
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| Q |
110 |
ctattattcaaaagttcacacgggattttgttatttt-ttaatggaaacacagttttaaaaacatggtaatctgtgttaatggattcagcccnnnnnnnn |
208 |
Q |
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| T |
25021456 |
ctattattaaaaagttcacacggggttttgttcttttcctaatggaaacacagttttaaaaacatggtaaactatgttaatggattcagcccaaaaacat |
25021555 |
T |
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| Q |
209 |
nnttcta---------catttaagattgtcctagccatcttttgtaaagtcctattttcctttcaacaactccattttgttacggagttcatggaaaacg |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25021556 |
ttatctacatttcattcatttaagattgtcctagccatcttttgtaaagtcctattttccttttcacaactccattttgttacggagttcatggaaaacg |
25021655 |
T |
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| Q |
300 |
aaaattaagagaaatatcgtt |
320 |
Q |
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| T |
25021656 |
aaaattaagagaaatatcgtt |
25021676 |
T |
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Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 29834 - 29760
Alignment:
| Q |
216 |
catttaagattgtcctagccatcttttgtaaagtcctattttc-ctttcaacaactccattttgttacggagttc |
289 |
Q |
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| T |
29834 |
catttaacattgttctagccatttcttgcaaagtcctattttttctttcaacaactccattttgttgtggagttc |
29760 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 29848014 - 29848071
Alignment:
| Q |
69 |
aataacatccaaaaatatggagataaaaaatatttggttttctattattcaaaagttc |
126 |
Q |
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| T |
29848014 |
aataacacccaaaaatatggcaataagaaatatttggttttctatttttccaaagttc |
29848071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 22906096 - 22906022
Alignment:
| Q |
216 |
catttaagattgtcctagccatcttttgtaaagtcctattttc-ctttcaacaactccattttgttacggagttc |
289 |
Q |
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| T |
22906096 |
catttaacatggttctagccatttcttgtaaagttctattttttctttcaacaactccattttgttgtggagttc |
22906022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 27166370 - 27166444
Alignment:
| Q |
216 |
catttaagattgtcctagccatcttttgtaaagtcctattttc-ctttcaacaactccattttgttacggagttc |
289 |
Q |
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| T |
27166370 |
catttaacatggttctagccatttcttgtaaagttctattttttctttcaacaactccattttgttgtggagttc |
27166444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 13508 - 13434
Alignment:
| Q |
216 |
catttaagattgtcctagccatcttttgtaaagtcctattttc-ctttcaacaactccattttgttacggagttc |
289 |
Q |
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| T |
13508 |
catttaacatggttctagccatttcttgtaaagttctattttttctttcaacaactccattttgttgtggagttc |
13434 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 22834689 - 22834615
Alignment:
| Q |
216 |
catttaagattgtcctagccatcttttgtaaagtcctatttt-cctttcaacaactccattttgttacggagttc |
289 |
Q |
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| T |
22834689 |
catttaacattgttctagccatttcttgcaaggttctatttttcctttcaacaactccattttgttgtggagttc |
22834615 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 20951812 - 20951738
Alignment:
| Q |
216 |
catttaagattgtcctagccatcttttgtaaagtcctattttc-ctttcaacaactccattttgttacggagttc |
289 |
Q |
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| T |
20951812 |
catttaacatggttctagccatttcttgtaaagttctattttttctttcaacaactccattttgttgtggagttc |
20951738 |
T |
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Target: scaffold0059 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 46808 - 46873
Alignment:
| Q |
216 |
catttaagattgtcctagccatcttttgtaaagtcctattttc-ctttcaacaactccattttgtt |
280 |
Q |
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||||||| ||||| ||||||| | ||||||||| ||||||| |||||||||||||||||||||| |
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| T |
46808 |
catttaacattgttttagccatttcttgtaaagttctattttttctttcaacaactccattttgtt |
46873 |
T |
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