View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_35 (Length: 312)
Name: NF6046_high_35
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 44901010 - 44901293
Alignment:
| Q |
14 |
agaagagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcg |
113 |
Q |
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| T |
44901010 |
agaagagggaacaggtggcaaatcaccaagatcatcacaacgcaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcg |
44901109 |
T |
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| Q |
114 |
gcgaaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtg |
213 |
Q |
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| T |
44901110 |
gcgaaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtg |
44901209 |
T |
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| Q |
214 |
tatatgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttga |
297 |
Q |
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| T |
44901210 |
tatatgaagacggtgatgctcaatctgctcttattgctatgcttcaatcactaaaccatgctaaaaatggtgtggatatcttga |
44901293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 44892361 - 44892638
Alignment:
| Q |
18 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
117 |
Q |
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| T |
44892361 |
gagggaacaattggtaaatcatcaagaccatcagaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtg |
44892460 |
T |
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| Q |
118 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
217 |
Q |
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| T |
44892461 |
aacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgtata |
44892560 |
T |
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| Q |
218 |
tgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatctt |
295 |
Q |
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| T |
44892561 |
tgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaagaaggtttggatatctt |
44892638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 44917764 - 44918039
Alignment:
| Q |
18 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
117 |
Q |
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| T |
44917764 |
gagggaacaagtagtaaatcaccgagaccatcacaacacaagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttactagag |
44917863 |
T |
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| Q |
118 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
217 |
Q |
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| T |
44917864 |
aacagggttcatttgattggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgagctacacaattattgtactagtgttta |
44917963 |
T |
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| Q |
218 |
tgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatc |
293 |
Q |
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| T |
44917964 |
tgaagagggtgatgctcgctctgctcttattgctatgctccaatcacttaatcatgctaaaaatggtgtggatatc |
44918039 |
T |
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