View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6046_high_40 (Length: 262)
Name: NF6046_high_40
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_40 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 32527922 - 32527681
Alignment:
| Q |
21 |
gtatactttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
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| T |
32527922 |
gtatactttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgcaaatgtattagagtagtccactccaaaa |
32527823 |
T |
|
| Q |
121 |
atataagtatagcctttaacaactagccttgccttgaacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgattt |
220 |
Q |
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|| | || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
32527822 |
atctgagcataacctttaacaactagccttgctttgaacttgttgatagagccatcggcattgagcttggttttgaaaacccatttgacgccaatgattt |
32527723 |
T |
|
| Q |
221 |
ttctatcttgaggtctttcaacaagctgccatgtattatttt |
262 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
32527722 |
tcctatcttgaggtctgtcaacaagctgccatgtattatttt |
32527681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 18013727 - 18013636
Alignment:
| Q |
163 |
ttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgatttttctatcttgaggtctttcaacaagctgccatgt |
254 |
Q |
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||||| |||||||| |||||||||| ||| |||||||||| || || || |||| ||||||||||||||| ||||||| |||| |||||| |
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| T |
18013727 |
ttgattgagccatcaacattgagctttgttctgaaaacccatttaactccaatgacttttctatcttgaggcttttcaaccagctcccatgt |
18013636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 28393757 - 28393516
Alignment:
| Q |
21 |
gtatactttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaa |
120 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
28393757 |
gtatactttccaacccttttgggctgcaataacaagtagcatccttatggtgtctagcctggccactggcgcaaatgtatcagagtagtccactccaaaa |
28393658 |
T |
|
| Q |
121 |
atataagtatagcctttaacaactagccttgccttgaacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgattt |
220 |
Q |
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|| | || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
28393657 |
atctgagcataacctttaacaactagccttgctttgaacttgttgatagagccatcggcattgagcttggttttgaaaacccatttgacgccaatgattt |
28393558 |
T |
|
| Q |
221 |
ttctatcttgaggtctttcaacaagctgccatgtattatttt |
262 |
Q |
| |
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| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
28393557 |
tcctatcttgaggtctgtcaacaagctgccatgtattatttt |
28393516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 1543998 - 1543761
Alignment:
| Q |
25 |
actttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaaatat |
124 |
Q |
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|||||||||||| |||| |||||||||||| | | ||| || || ||||||||||| ||||| | ||| || || |||||||| ||| ||||||| | |
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| T |
1543998 |
actttccaacccatttgtattgcaacagcaagcaataacctgatagtatctagcctggcaactggtgcaaacgtgtctgagtagtctactccaaaaatct |
1543899 |
T |
|
| Q |
125 |
aagtatagcctttaacaactagccttgccttgaacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgatttttct |
224 |
Q |
| |
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|| |||||||||||| || ||||| ||||| ||||||||| |||||||| ||||| ||||| ||| || |||||||| || || ||||||||||| |
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| T |
1543898 |
gagcatagcctttaaccaccagcctcgccttatgcttgttgatggagccatcagcatttagcttggttcgaaacacccacttcacaccaatgatttttct |
1543799 |
T |
|
| Q |
225 |
atcttgaggtctttcaacaagctgccatgtattatttt |
262 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
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| T |
1543798 |
gtcttgaggtctatcaacaagttgccatgtattatttt |
1543761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 57 - 262
Target Start/End: Original strand, 6834573 - 6834778
Alignment:
| Q |
57 |
tagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaaatataagtatagcctttaacaactagccttgccttg |
156 |
Q |
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|||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||| | || ||| ||||||||||||||||||||||| |
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| T |
6834573 |
tagcatccttatggtgcctagcctgaccactggcgcaaatgtatcagagtagtccactccaaaaatttgagcataatctttaacaactagccttgccttg |
6834672 |
T |
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| Q |
157 |
aacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgatttttctatcttgaggtctttcaacaagctgccatgtat |
256 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
6834673 |
aacttgttgatagagacatcggcattgagcttagttttgaaaacccacttgacgccaatgattttcctatcttgaggtctgtcaacaagttgccatgtat |
6834772 |
T |
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| Q |
257 |
tatttt |
262 |
Q |
| |
|
|||||| |
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| T |
6834773 |
tatttt |
6834778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 26403631 - 26403394
Alignment:
| Q |
25 |
actttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaaatat |
124 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | ||| || || ||||||||||| ||||| | ||| || || |||||||| ||| ||||||| | |
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| T |
26403631 |
actttccaacccatttgtattgcaacagcaagcaataacctgatagtatctagcctggcaactggtgcaaacgtgtctgagtagtctactccaaaaatct |
26403532 |
T |
|
| Q |
125 |
aagtatagcctttaacaactagccttgccttgaacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgatttttct |
224 |
Q |
| |
|
|| |||||||||||| || ||||| ||||| ||||||||| |||||||| ||||| ||||| ||| || |||||||| || || ||||||||||| |
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| T |
26403531 |
gagcatagcctttaaccaccagcctcgccttatgcttgttgatggagccatcagcatttagcttggttcgaaacacccacttcacaccaatgatttttct |
26403432 |
T |
|
| Q |
225 |
atcttgaggtctttcaacaagctgccatgtattatttt |
262 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
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| T |
26403431 |
gtcttgaggtctatcaacaagttgccatgtattatttt |
26403394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 6832385 - 6832419
Alignment:
| Q |
21 |
gtatactttccaacccttttgggctgcaacagcaa |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
6832385 |
gtatactttccaacccttttgggctgcaacagcaa |
6832419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 30507347 - 30507581
Alignment:
| Q |
25 |
actttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaaatat |
124 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| | || ||| || || ||||||||||| ||| | | |||||| | |||||||| ||| ||||||| | |
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|
| T |
30507347 |
actttccaacccatttgtactgcaacagcaagcaacaacctaatagtatctagcctggcaactagtgcaaatgtgtttgagtagtctactccaaaaatct |
30507446 |
T |
|
| Q |
125 |
aagtatagcctttaacaactagccttgccttgaacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgatttttct |
224 |
Q |
| |
|
|| |||||||||||| || ||||| |||||| ||||||||| |||||||| |||| ||||| |||| || |||||||| || || ||||||||||| |
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| T |
30507447 |
gagcatagcctttaaccaccagcctcgccttgtgcttgttgatggagccatcaacatttagcttggtttgaaacacccacttaaccccaatgatttttct |
30507546 |
T |
|
| Q |
225 |
atcttgaggtctttcaacaagctgccatgtattat |
259 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |
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|
| T |
30507547 |
gtcttgaggtctatcaacaagttgccatgtattat |
30507581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 17796120 - 17795883
Alignment:
| Q |
25 |
actttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaaatat |
124 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | ||| || || ||||||||||| ||||| | ||| || || |||||||| ||| ||||||| | |
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|
| T |
17796120 |
actttccaacccatttgtattgcaacagcaagcaataacctgatagtatctagcctggcaactggtgcaaacgtgtctgagtagtctactccaaaaatct |
17796021 |
T |
|
| Q |
125 |
aagtatagcctttaacaactagccttgccttgaacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgatttttct |
224 |
Q |
| |
|
|| |||||||||||| || ||||| ||||| ||||||||| |||||||| ||||| ||||| ||| || |||||||| || || ||||||||||| |
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|
| T |
17796020 |
gagcatagcctttaaccaccagcctcgccttatgcttgttgatggagccatcagcatttagcttggttcgaaacacccacttcacaccaatgatttttct |
17795921 |
T |
|
| Q |
225 |
atcttgaggtctttcaacaagctgccatgtattatttt |
262 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
17795920 |
gtcttgaggtctatcaacaagttgccatgtattatttt |
17795883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 7036702 - 7036465
Alignment:
| Q |
25 |
actttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactacaaaaatat |
124 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | ||| || || ||||||||||| ||||| | ||| || || |||||||| ||| |||||| | |
|
|
| T |
7036702 |
actttccaacccatttgtattgcaacagcaagcaataacctgatagtatctagcctggcaactggtgcaaacgtgtctgagtagtctactctaaaaatct |
7036603 |
T |
|
| Q |
125 |
aagtatagcctttaacaactagccttgccttgaacttgttgatagagccatcggcattgagcttagttttgaaaacccacttgacgccgatgatttttct |
224 |
Q |
| |
|
|| |||||||||||| || ||||| ||||| ||||||||| |||||||| ||||| ||||| ||| || |||||||| || || ||||||||||| |
|
|
| T |
7036602 |
gagcatagcctttaaccaccagcctcgccttatgcttgttgatggagccatcagcatttagcttggttcgaaacacccacttcacaccaatgatttttct |
7036503 |
T |
|
| Q |
225 |
atcttgaggtctttcaacaagctgccatgtattatttt |
262 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
7036502 |
gtcttgaggtctatcaacaagttgccatgtattatttt |
7036465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 43372492 - 43372388
Alignment:
| Q |
17 |
actagtatactttccaacccttttgggctgcaacagcaagtagcatccttatggtgtctagcctggccactggcgtaaatgtatcagagtagtccactac |
116 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| || ||||| | | | ||||||||| |||||||||||| ||||||||| ||| |||||||| |
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|
| T |
43372492 |
actagtatactttcaaaaccttttgggctgcaaccaaaattagcaacttgagggtgtctagtttggccactggcgcaaatgtatctaagtggtccactaa |
43372393 |
T |
|
| Q |
117 |
aaaaa |
121 |
Q |
| |
|
||||| |
|
|
| T |
43372392 |
aaaaa |
43372388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 43372353 - 43372277
Alignment:
| Q |
181 |
ttgagcttagttttgaaaacccacttgacgccgatgatttttctatcttgaggtctttcaacaagctgccatgtatt |
257 |
Q |
| |
|
|||| ||| ||||||||||||||||||| ||| |||| || ||||||||||| | |||||||| || |||||||| |
|
|
| T |
43372353 |
ttgaacttggttttgaaaacccacttgatgccaatgacattcatatcttgaggtttgtcaacaagttgtcatgtatt |
43372277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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