View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_41 (Length: 261)
Name: NF6046_high_41
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 38462604 - 38462853
Alignment:
| Q |
1 |
attctatggactactttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaataaatttcgttttattttggtcatataacatgtt |
100 |
Q |
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| T |
38462604 |
attctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaatatatttcgttttattttggtcatataacatgtt |
38462703 |
T |
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| Q |
101 |
tattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaatagattgtttttgctgtatagctttgttct |
200 |
Q |
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| T |
38462704 |
tattctattatttgactgttttgtgtgctaataatcactatgtttataaagcttgacatagcttaacaaatagattgtttttgctgtatagctttgttct |
38462803 |
T |
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| Q |
201 |
ctgtataaactgtatgtgataattatatatttttagatttttatcttcat |
250 |
Q |
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| T |
38462804 |
ctgtataaactgtatgtgataattatatatttctagatttttatcttcat |
38462853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 52091356 - 52091122
Alignment:
| Q |
17 |
tagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaataaatttcgttttattttggtcatataacatgttt-----attctattat |
111 |
Q |
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| T |
52091356 |
tagtaatgcagtgttgtgtgtcattgacacaatttgttgtattttatcaacatatttctttttgttttagtcatataacatgtttcctttattctattgt |
52091257 |
T |
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| Q |
112 |
ttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaatagattgtttttgctgtatagctttgttctctgtataaact |
211 |
Q |
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| T |
52091256 |
tttattgttctctatgctaat---cactatgtttataaagcttgcaatagcttttcaaatcgaatgtttttgctgtataactttgttctttgtacaaatt |
52091160 |
T |
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| Q |
212 |
gtatgtgataattatatatttttagatttttatcttca |
249 |
Q |
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| T |
52091159 |
acatgcgataattttatatttctagatgtttatcttca |
52091122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 40733353 - 40733238
Alignment:
| Q |
81 |
ttttggtcatataacatgtttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaatag--attgt |
178 |
Q |
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| T |
40733353 |
ttttggtcatataacatgttttttctatcatttgactggtttgtgtgc---taatcactatgcttatacagcttggcatggcttaacaaatagatatttt |
40733257 |
T |
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| Q |
179 |
ttttgctgtatagctttgt |
197 |
Q |
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| T |
40733256 |
ttatgctgtatggctttgt |
40733238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 48754430 - 48754467
Alignment:
| Q |
132 |
taatcactatgtttataaagcttgacatagcttaacaa |
169 |
Q |
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| T |
48754430 |
taatcactatgtttataaagcttgccatagcttaacaa |
48754467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 48753183 - 48753215
Alignment:
| Q |
92 |
taacatgtttattctattatttgactgttttgt |
124 |
Q |
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| T |
48753183 |
taacatgtttattctattatttgactggtttgt |
48753215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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