View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_48 (Length: 239)
Name: NF6046_high_48
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 40902948 - 40903154
Alignment:
| Q |
16 |
cacatcgctagtgggaaacgttggtgccgtcaaaaatctgtatgtttggttggagattacttcaagataggctaccaatccgggtagaattatggagtag |
115 |
Q |
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| T |
40902948 |
cacatcgctagtgggaaacgttggtgccgtcaaaaatctgtatgtttggttggagattacttcaagataggctaacaacccgggtagaattatggagtag |
40903047 |
T |
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| Q |
116 |
aggggttattcgcgatgtgcataaaaaatgttgtgtgttttgctttttgcaaagggaagaaaggcaagaaagtgtcccacttagtttggctaacaatggc |
215 |
Q |
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| T |
40903048 |
aggggttattcgcgatgtgcatcaacaatgttgtgtgttttgctttttgcaaagggaagaaaggcaagaaagtgtcccacttagtttggctaacaatggc |
40903147 |
T |
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| Q |
216 |
ttggtgt |
222 |
Q |
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||||||| |
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| T |
40903148 |
ttggtgt |
40903154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 30149811 - 30149954
Alignment:
| Q |
18 |
catcgctagtgggaaacgttggtgccgtcaaaaatctgtatgtttggttggagattacttcaagataggctaccaatccgggtagaattatggagtagag |
117 |
Q |
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| T |
30149811 |
catcgctagtgggaaacgtcggtgccgtcaaaaatttgtatgtttggatggagattacttcaagataggctaccaacccgggtagaattatggaggagag |
30149910 |
T |
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| Q |
118 |
gggttattcgcgatgtgcataaaaaatgttgtgtgttttgcttt |
161 |
Q |
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| T |
30149911 |
gggttattcgcagcgtgcatcaacaatgttgtgtgttttgcttt |
30149954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 30150097 - 30150147
Alignment:
| Q |
161 |
tttgcaaagggaagaaaggcaagaaagtgtcccacttagtttggctaacaa |
211 |
Q |
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| T |
30150097 |
tttgcaaaggggggaatggcaagaaagtgtcccacttagtttggctaacaa |
30150147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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