View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_high_51 (Length: 235)
Name: NF6046_high_51
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 41286674 - 41286453
Alignment:
| Q |
4 |
tggttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgccaaagacaaactcggtctgatccatggaac |
103 |
Q |
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| T |
41286674 |
tggttaaccaacctctgaatggaggtaactacggcgaatggagtcgatcaatgctcctcagcctcagcgccaaaaacaaactcggtctgatcgatggaac |
41286575 |
T |
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| Q |
104 |
agtgaaagcgtggtcggctgatgacccaaaactcccattatgtaaacgttgcaatgatctggtgttaacatggatccttcattccatcgaacccgagata |
203 |
Q |
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||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
41286574 |
ggtgaaagcgccgtcggctgacgacccaaaactcccattgtggaaacgttgcaatgatctggtgctaacatggatccttcattccatcgaacccgacata |
41286475 |
T |
|
| Q |
204 |
gctcgtagtgtaatattctctg |
225 |
Q |
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|||||||||||||| ||||||| |
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| T |
41286474 |
gctcgtagtgtaatcttctctg |
41286453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 19524102 - 19523985
Alignment:
| Q |
4 |
tggttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgccaaagacaaactcggtctgatccatggaac |
103 |
Q |
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||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
19524102 |
tggttaaccaacctctgaatggacgtaactacggctaatggagtcgcttaatgctcctcagtcttagcgccaaaaacaaactcggtctgatcgatggaac |
19524003 |
T |
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| Q |
104 |
agtgaaagcgtggtcggc |
121 |
Q |
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| T |
19524002 |
agtgaaagcgtcgtcggc |
19523985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 19523986 - 19523915
Alignment:
| Q |
154 |
gcaatgatctggtgttaacatggatccttcattccatcgaacccgagatagctcgtagtgtaatattctctg |
225 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19523986 |
gcaaggatctggtgttaacatggattcttcattccatcgaacccgacatagctcgtagtgtaatattctctg |
19523915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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