View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_high_9 (Length: 541)

Name: NF6046_high_9
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_high_9
NF6046_high_9
[»] chr3 (12 HSPs)
chr3 (18-525)||(24617481-24617988)
chr3 (162-525)||(24105876-24106238)
chr3 (363-525)||(24113423-24113584)
chr3 (162-278)||(24113288-24113410)
chr3 (331-498)||(24101665-24101834)
chr3 (388-442)||(24616871-24616925)
chr3 (410-480)||(23359762-23359832)
chr3 (410-480)||(23364583-23364653)
chr3 (410-480)||(23695061-23695131)
chr3 (410-480)||(23713501-23713571)
chr3 (410-480)||(23731957-23732027)
chr3 (410-480)||(23750412-23750482)
[»] chr8 (6 HSPs)
chr8 (18-149)||(1343438-1343569)
chr8 (18-149)||(1356018-1356149)
chr8 (34-148)||(1360543-1360657)
chr8 (34-147)||(1349886-1349999)
chr8 (36-143)||(11366705-11366812)
chr8 (48-88)||(1353313-1353353)
[»] chr2 (2 HSPs)
chr2 (18-147)||(43365081-43365210)
chr2 (18-148)||(43369229-43369359)
[»] chr7 (1 HSPs)
chr7 (36-147)||(29389250-29389361)


Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 24617988 - 24617481
Alignment:
Q  18 catcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617988 catcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgagg 24617889  T
Q  118 aagacatattggagaagtcttggaagatcctttttgtaatactaatacttgcggctcgatttagaactttgttctccacatcacaagtagataagttaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617888 aagacatattggagaagtcttggaagatcctttttgtaatactaatacttgcggctcgatttagaactttgttctccacatcacaagtagataagttaac 24617789  T
Q  218 agtatttgatcattacatgcctctcttttcaaatagaagtgtagatacttggtttgttatttttnnnnnnntaattaaaccttgtgaattttacattgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  24617788 agtatttgatcattacatgcctctcttttcaaatagaagtgtagatacttggtttgttatttttaaaaaaataattaaaccttgtgaattttacattgaa 24617689  T
Q  318 tcatgctgtgatgaaatacatgtgttggcacataaatagagacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatgga 417  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617688 tcatgctgtgatgaaatacatgtgttggcacataaatagggacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatgga 24617589  T
Q  418 gatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagcca 517  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  24617588 gatttggttgaattcaatcatgtatgcaggcatgcagatggatacattgttttcaggtaatgtcatactgtgaattttccccttaattgtgtttaagcca 24617489  T
Q  518 atatatat 525  Q
    ||||||||    
T  24617488 atatatat 24617481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 162 - 525
Target Start/End: Original strand, 24105876 - 24106238
Alignment:
Q  162 atacttgcggctcgatttagaactttgttctccacatcacaagtagataagttaacagtatttgatcattacatgcctctcttttcaaatagaagtgtag 261  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||| ||    
T  24105876 atacttgctgctcgatttagaactttgttctccacatcacaagtaga-aagttaggagtatttgatcattacatgcctcttttttcaaatagaagtgcag 24105974  T
Q  262 atacttggtttgttatttttnnnnnnntaattaaaccttgtgaattttacattgaatcatgctgtgatgaaatacatgtgttggcacataaatagagaca 361  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||    
T  24105975 atacttggtttgttattttaaaaaaaataattaaaccttgtgaattttacattgaatcaagctgtgaagaaatacatgtgttagcgcataaatagagaca 24106074  T
Q  362 cattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggata 461  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24106075 cattagttttgaaatcagatgttactaaaggggaaggaccagaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggata 24106174  T
Q  462 cattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatat 525  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24106175 ctttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatat 24106238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 363 - 525
Target Start/End: Original strand, 24113423 - 24113584
Alignment:
Q  363 attagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac 462  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24113423 attagtttt-aaatcagatgttactaaagtggaaggaccggaatcacgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac 24113521  T
Q  463 attgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatat 525  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24113522 tttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatat 24113584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 24113288 - 24113410
Alignment:
Q  162 atacttgcggctcgatttagaactttgttctccacatcacaa---------gtagataagttaacagtatttgatcattacatgcctctcttttcaaata 252  Q
    ||||||||||||| |||||||||||||||||||||| |||||         |||||||||||| ||||||||||||||||||||||||   |||||||||    
T  24113288 atacttgcggctcaatttagaactttgttctccacaccacaatgtatgtcagtagataagttagcagtatttgatcattacatgcctc---tttcaaata 24113384  T
Q  253 gaagtgtagatacttggtttgttatt 278  Q
    ||||||||||||||| ||||||||||    
T  24113385 gaagtgtagatacttagtttgttatt 24113410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 331 - 498
Target Start/End: Original strand, 24101665 - 24101834
Alignment:
Q  331 aaatacatgtgttggcacataaatagagac--acattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttga 428  Q
    ||||||||||||| ||||||||||||| ||  | ||||||||| |||| || ||||||| ||||||||||| | ||| | |  |  || |||||||||||    
T  24101665 aaatacatgtgttagcacataaatagatacttatattagttttcaaattagttgttactgaaggggaaggaccagaagcacacgggggcgatttggttga 24101764  T
Q  429 attcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttccc 498  Q
    |||||||| ||||||||| | |||| |||||||| |||||||||||| |||||||  | |||||||||||    
T  24101765 attcaattgtgtatgcagacgtgcaaatggatactttgttttcaggtgatttcatgatatgaattttccc 24101834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 24616925 - 24616871
Alignment:
Q  388 aaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtat 442  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24616925 aaaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtat 24616871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 23359832 - 23359762
Alignment:
Q  410 gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt 480  Q
    ||||| ||||||||||||| |||||||||| | ||  || |||| ||||| |||||||||| |||||||||    
T  23359832 gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt 23359762  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 23364653 - 23364583
Alignment:
Q  410 gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt 480  Q
    ||||| ||||||||||||| |||||||||| | ||  || |||| ||||| |||||||||| |||||||||    
T  23364653 gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt 23364583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 23695131 - 23695061
Alignment:
Q  410 gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt 480  Q
    ||||| ||||||||||||| |||||||||| | ||  || |||| ||||| |||||||||| |||||||||    
T  23695131 gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt 23695061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 23713571 - 23713501
Alignment:
Q  410 gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt 480  Q
    ||||| ||||||||||||| |||||||||| | ||  || |||| ||||| |||||||||| |||||||||    
T  23713571 gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt 23713501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 23732027 - 23731957
Alignment:
Q  410 gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt 480  Q
    ||||| ||||||||||||| |||||||||| | ||  || |||| ||||| |||||||||| |||||||||    
T  23732027 gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt 23731957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 23750482 - 23750412
Alignment:
Q  410 gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt 480  Q
    ||||| ||||||||||||| |||||||||| | ||  || |||| ||||| |||||||||| |||||||||    
T  23750482 gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt 23750412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 1343569 - 1343438
Alignment:
Q  18 catcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgagg 117  Q
    ||||||| |||||| |||| ||||||||| | ||||  ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1343569 catcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgagg 1343470  T
Q  118 aagacatattggagaagtcttggaagatcctt 149  Q
    ||||||||||||||||||||||||||||||||    
T  1343469 aagacatattggagaagtcttggaagatcctt 1343438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 1356018 - 1356149
Alignment:
Q  18 catcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgagg 117  Q
    ||||||| |||||| |||| ||||||||| | ||||  ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1356018 catcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgagg 1356117  T
Q  118 aagacatattggagaagtcttggaagatcctt 149  Q
    ||||||||||||||||||||||||||||||||    
T  1356118 aagacatattggagaagtcttggaagatcctt 1356149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 1360657 - 1360543
Alignment:
Q  34 ttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaa 133  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| | ||||||||| || | |||| || |||||||||||||| ||||    
T  1360657 ttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatattgcagaa 1360558  T
Q  134 gtcttggaagatcct 148  Q
     ||||||||||||||    
T  1360557 ctcttggaagatcct 1360543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 1349999 - 1349886
Alignment:
Q  34 ttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaa 133  Q
    ||||||||| ||||||||||||| ||||| |||| ||||||||||||||||| || | |||| || |||| | |||||||||||||||||||||||||||    
T  1349999 ttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatattggagaa 1349900  T
Q  134 gtcttggaagatcc 147  Q
     ||||| |||||||    
T  1349899 ctcttgcaagatcc 1349886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 11366812 - 11366705
Alignment:
Q  36 ccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagt 135  Q
    ||||||||||| ||||| |||| |||| ||||||||| ||||||||||||||| | | |||||||||| ||||||||||||||||||||| || | || |    
T  11366812 ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt 11366713  T
Q  136 cttggaag 143  Q
    ||||||||    
T  11366712 cttggaag 11366705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 1353353 - 1353313
Alignment:
Q  48 ggccttgtacgtgatcaaatcgacaataatcaagaattaag 88  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  1353353 ggccttttacgtgatgaaatcgacaataatcaagaattaag 1353313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 43365081 - 43365210
Alignment:
Q  18 catcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgagg 117  Q
    ||||||| |||||| |||||||||||||| ||||| || | |||| |||||||||||||| |||||| ||| |  |||||| || | |||| ||||||||    
T  43365081 catcataggactttcgttccttgtttgagcggcctggtgcttgatgaaatcgacaataattaagaatcaagctccacattggagaactgacctgttgagg 43365180  T
Q  118 aagacatattggagaagtcttggaagatcc 147  Q
    |||||||| || | || |||||||||||||    
T  43365181 aagacatactgcacaattcttggaagatcc 43365210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 43369229 - 43369359
Alignment:
Q  18 catcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgagg 117  Q
    ||||||||| |||||||||||||| |||| ||||| || |  ||  |||||||||||||| |||||||||| |  |||||| || | | || ||||||||    
T  43369229 catcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgagg 43369328  T
Q  118 aagacatattggagaagtcttggaagatcct 148  Q
    ||||||| ||| | || ||||||||||||||    
T  43369329 aagacatgttgcacaattcttggaagatcct 43369359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 29389250 - 29389361
Alignment:
Q  36 ccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagt 135  Q
    ||||||||||| ||||| |||| |||| ||| |||||||||||||||| |||| | ||||| ||||||| ||||| || |||||||||||| | | || |    
T  29389250 ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt 29389349  T
Q  136 cttggaagatcc 147  Q
     |||||||||||    
T  29389350 tttggaagatcc 29389361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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