View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_10 (Length: 534)
Name: NF6046_low_10
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 7623875 - 7624392
Alignment:
| Q |
1 |
gatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623875 |
gatttttcggagcattcgccacctcggaccataaggggcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
7623974 |
T |
|
| Q |
101 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7623975 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcattaaagggc |
7624074 |
T |
|
| Q |
201 |
catggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7624075 |
catggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtgg |
7624174 |
T |
|
| Q |
301 |
tagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggttaattta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7624175 |
tagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccatagagacatggttaattta |
7624274 |
T |
|
| Q |
401 |
tgttatgtatgtggctatggttatgaaatatgaaatatatgtgatgatgattaaggattaaggatataaataagttttgtacgtataacaacagcaatct |
500 |
Q |
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| T |
7624275 |
tgttatgtatgtggctatggttatgaaatatgaaatatatgtgatgatgattaaggattaaggatataaataagttttgtacgtataacaacagcaatct |
7624374 |
T |
|
| Q |
501 |
atttgaatagggaaaaac |
518 |
Q |
| |
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|||||||||||||||||| |
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| T |
7624375 |
atttgaatagggaaaaac |
7624392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 7659810 - 7659415
Alignment:
| Q |
1 |
gatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659810 |
gatttttcggagcattcgccaccgcggaccataaggtgcaaacacaaggtcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
7659711 |
T |
|
| Q |
101 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659710 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagccagaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
7659611 |
T |
|
| Q |
201 |
catggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtgg |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7659610 |
catgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtgg |
7659511 |
T |
|
| Q |
301 |
tagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggttaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7659510 |
tagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggttaa |
7659415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 7675437 - 7675047
Alignment:
| Q |
1 |
gatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
100 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||||||| |||||||||| |||||||| |||||| |||| || |||||||||| ||||||||||||||| |
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|
| T |
7675437 |
gatttttctgagtagtcgccaccttggaccataaggaccaaacacaaggtcttgataattataacctatgtacttagctccggcattgggtggccggcta |
7675338 |
T |
|
| Q |
101 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
200 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| || |||||| | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |
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| T |
7675337 |
ctaaagttagcatcatgtacctttaagaattgttccgccacggaggccgaagccgccacgatcacatccaccgagcctaatttgaggtgcatcaaagggc |
7675238 |
T |
|
| Q |
201 |
catggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtgg |
300 |
Q |
| |
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||| | ||| ||||||| ||||| ||| |||||||| ||||| || | |||||| | |||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
7675237 |
cataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtgg |
7675138 |
T |
|
| Q |
301 |
tagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
391 |
Q |
| |
|
||||||||||| |||| ||||||| |||| ||||||||||| | ||| ||||| || |||||| |||||||||| ||||||||||||| |
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| T |
7675137 |
tagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
7675047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 45477762 - 45477623
Alignment:
| Q |
17 |
cgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcat |
116 |
Q |
| |
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||||||||||| |||||||| ||||| |||||||||||||| ||||| |||| ||||| || |||| ||| | |||||||||| ||| || | ||||| |
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| T |
45477762 |
cgccaccgtggtccataaggagcaaaaacaagatcttgataattatatgctaagtatttggcgccggagttagttggccggctagaaaaattggtatcat |
45477663 |
T |
|
| Q |
117 |
gaacctttaagaattgttcggcaacggagcctgaagccgc |
156 |
Q |
| |
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|||| |||||||||||||| || || ||| | |||||||| |
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| T |
45477662 |
gaacttttaagaattgttcagcgaccgaggcggaagccgc |
45477623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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