View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_12 (Length: 482)
Name: NF6046_low_12
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_12 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 9828980 - 9829458
Alignment:
| Q |
1 |
atcatcaccatcatcatcaacaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttacaaatcggtttnnnnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
9828980 |
atcatcaccatcatcatcaacaacatttactaactcatcagcacttctttcctgaacacgattccttataagtttactaatcggtttatcatcatcatca |
9829079 |
T |
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| Q |
101 |
nnnntttcatactcactaataaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9829080 |
t---tttcatactcactaataaagacattacgagtccgtttccttttcggaattacagcacataagagatcttcaacaaaatcagaatcttcctcgttgc |
9829176 |
T |
|
| Q |
201 |
tttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9829177 |
tttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcagatacatcttgaaa |
9829276 |
T |
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| Q |
301 |
attagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829277 |
attagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatca |
9829376 |
T |
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| Q |
401 |
ccaataaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatacttt |
482 |
Q |
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| T |
9829377 |
ccaataaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatacttt |
9829458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 105 - 473
Target Start/End: Original strand, 9755629 - 9755993
Alignment:
| Q |
105 |
tttcatactcactaataaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttg |
204 |
Q |
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||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
9755629 |
tttcagactcacttataaagacattacgagtccgtttcctttttggaattacagcacataagagatcttcaacaaaatcagaatcttcctcactgctttg |
9755728 |
T |
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| Q |
205 |
atcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaaatta |
304 |
Q |
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| T |
9755729 |
atcataattggagtacaaattctttcccttttttgttgcagaacatgttgactgagaaatatattcactgccttgcatatcagacacatcttgaaaataa |
9755828 |
T |
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| Q |
305 |
gaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaa |
404 |
Q |
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| T |
9755829 |
gagttcttgttactagta----attctgcgtcactattagactcatcttgtgaagtattagacatgccttcacaatcagatgcatcaaaatcatcaacaa |
9755924 |
T |
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| Q |
405 |
taaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttg |
473 |
Q |
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| T |
9755925 |
taaaatcattcatgtttccttcctcactgtatgtcaaatcctcttctagttcatcatcatcgtttgttg |
9755993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 178 - 439
Target Start/End: Original strand, 9813864 - 9814122
Alignment:
| Q |
178 |
aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct |
277 |
Q |
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||||||||| | ||| | |||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| |
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| T |
9813864 |
aaaatcagatttttcgtcattgatttgatcctaattggagtaaaaattctttcccttttctgctgcagaatttgttgacagagaaatacttccactacct |
9813963 |
T |
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| Q |
278 |
tgcatatcaaatacatcttgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcac |
377 |
Q |
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| T |
9813964 |
tgcatatcagatacatcttgcaaataagaatccttgctacacgaactagattctgcgtcactgctagactcatctcgtgaattattagacatgccttcac |
9814063 |
T |
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| Q |
378 |
aatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtc |
439 |
Q |
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| T |
9814064 |
aatcagatgcatcaaaataat---caataaaatcactattgttttcttcctcattgtgtgtc |
9814122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 480
Target Start/End: Original strand, 9708475 - 9708620
Alignment:
| Q |
335 |
tcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgt |
434 |
Q |
| |
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|||||||||||| | || |||| |||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||| || ||| |||||||||| | |
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| T |
9708475 |
tcactattagactcttcctgtgacttatcagatatgtcttcacaatcagatgcatcaacatcatcaacaataaaatcactaaggttatcttcctcactat |
9708574 |
T |
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| Q |
435 |
atgtcgaatcctcttctaattcatcatcatcatttgttggaatact |
480 |
Q |
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| T |
9708575 |
atgacaaatccactcctaggtcatcatcatcattttttggaatact |
9708620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 9755516 - 9755592
Alignment:
| Q |
1 |
atcatcaccatcatcatcaacaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttac |
77 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
9755516 |
atcatcagcatcatcatcaacaacatttaccaactcgtcagcacttctttcctgaacatgattccttacaagtttac |
9755592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 318
Target Start/End: Original strand, 9804111 - 9804250
Alignment:
| Q |
178 |
aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct |
277 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||||| || ||||| | ||||||||||||||||| |||| ||||||| ||| | ||||||| |
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| T |
9804111 |
aaaatcagaaatttcctcattgttttgatcataattggagtaaaagttctt-cgcttttctgctgcagaacttgttggcagagaaatacctccactacct |
9804209 |
T |
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| Q |
278 |
tgcatatcaaatacatcttgaaaattagaattcttgttact |
318 |
Q |
| |
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||||| ||| ||||||| || |||| ||||| |||| |||| |
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| T |
9804210 |
tgcatttcagatacatcctgcaaataagaatccttgctact |
9804250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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