View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_13 (Length: 465)
Name: NF6046_low_13
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 191 - 446
Target Start/End: Original strand, 14172249 - 14172504
Alignment:
| Q |
191 |
atttttctcacctgtattgagtcccaattttttctggtaaaagctgaatgatatcatcaataggataccatggatgagcaaaacattcactccacaactt |
290 |
Q |
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| T |
14172249 |
attttgctcacctgtattgagtcccaattttttctggtaaaagctgaatgatatcatcaataggataccatggatgagcaaaacattcactccacaactt |
14172348 |
T |
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| Q |
291 |
aaccttttctccaccatccacttgaagataataattaaacaaccttacattcttggtattatctgttgatgaaagatgttctctttcctctggtgccaac |
390 |
Q |
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| T |
14172349 |
aaccttttctccaccatccacttgaaggtaataattgaacaaccttacattcttggtattatctgttgatgaaagatgttctctttcctctggtgccaac |
14172448 |
T |
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| Q |
391 |
tcaaagaagttggtaattgctttcatcattttagtgcaaacttggtcaggaacacc |
446 |
Q |
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| T |
14172449 |
tcaaagaagttggtaattgctttcatcattttagtgcaaacttggtcaggaacacc |
14172504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 191 - 446
Target Start/End: Original strand, 14179709 - 14179964
Alignment:
| Q |
191 |
atttttctcacctgtattgagtcccaattttttctggtaaaagctgaatgatatcatcaataggataccatggatgagcaaaacattcactccacaactt |
290 |
Q |
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| T |
14179709 |
atttttctcacctgtattgggtcccaatattttctggtagaagagaaatgatatcatccataggataccatggatgaacaaaattttcactccacaactt |
14179808 |
T |
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| Q |
291 |
aaccttttctccaccatccacttgaagataataattaaacaaccttacattcttggtattatctgttgatgaaagatgttctctttcctctggtgccaac |
390 |
Q |
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| T |
14179809 |
caccgtttctccaccatctactcgaagtaaataattgaccaatcttacattcttggtatgatctgttgatgaaagatgttttctttcctctggtgccaac |
14179908 |
T |
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| Q |
391 |
tcaaagaagttggtaattgctttcatcattttagtgcaaacttggtcaggaacacc |
446 |
Q |
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| T |
14179909 |
tcaaagaagtttgtaattgctttcatcattttagtgcaaacttggtcaggaacacc |
14179964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 190 - 446
Target Start/End: Original strand, 14175699 - 14175955
Alignment:
| Q |
190 |
aatttttctcacctgtattgagtcccaattttttctggtaaaagctgaatgatatcatcaataggataccatggatgagcaaaacattcactccacaact |
289 |
Q |
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| T |
14175699 |
aattttcctcacctgtattgattcccaattttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataact |
14175798 |
T |
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| Q |
290 |
taaccttttctccaccatccacttgaagataataattaaacaaccttacattcttggtattatctgttgatgaaagatgttctctttcctctggtgccaa |
389 |
Q |
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| T |
14175799 |
tcaccttttcttcaccttcaacttgaaggtaataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctctttcttctggtggcaa |
14175898 |
T |
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| Q |
390 |
ctcaaagaagttggtaattgctttcatcattttagtgcaaacttggtcaggaacacc |
446 |
Q |
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| T |
14175899 |
ctcaaaaagacttgaaattgctttcatcattttagtgcaaactttgttagggacacc |
14175955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 14172191 - 14172230
Alignment:
| Q |
59 |
tctctacaatataaaaggatccgatgcattatatcagtca |
98 |
Q |
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| T |
14172191 |
tctctgcaatataaaaggatccgatgcattatatcggtca |
14172230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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