View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_2 (Length: 690)
Name: NF6046_low_2
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Complemental strand, 36289443 - 36289004
Alignment:
| Q |
10 |
attattctgtaacaaaccctactctacccttttttacagccgccacc---ccttaaagttgtaactctgtaacatttcatctccccccttcatttcttca |
106 |
Q |
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| T |
36289443 |
attattctgtaacaaaccctactctacccttttttacagccgccaccaccccttaaagttgtaactctgtaacatttcatcttcccccttcatttcttca |
36289344 |
T |
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| Q |
107 |
caactcattcttctttttctttatgcacacaataacccaaataaatttcccttcatatttttatcccacattgatctagatgcaatgctaacaagaaaat |
206 |
Q |
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| T |
36289343 |
caactcattcttctttttctttatgcacacaataacccaaataaatttcccttcatatttttatcccacattgatctagatgcaatgctaacaagaaaat |
36289244 |
T |
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| Q |
207 |
ttccaaacccatgaaggatactttctccttcgggaatcactgtttgggtctttaggcaaagcattggtgaaaaagtggaataagaagaaactattcatgg |
306 |
Q |
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| T |
36289243 |
ttccaaacccatgaaggatactttctccttcgggaatcactgtttgggtctttaagcaaagcattggtgaaaaagtggaataagaagaaactattcatgg |
36289144 |
T |
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| Q |
307 |
acttcacaaagattcattttcaattgtttaagaatgcttggtgtgtctttgtttgtacgaggtatggttttgaggactagaatcgatctcatttgtggtg |
406 |
Q |
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| T |
36289143 |
acttcacaaagattcattttcaattgtttaagaatgtttggtgtgtctttgtttgtacgaggtatggttttgaggactaggatcgatctcatttgtggtg |
36289044 |
T |
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| Q |
407 |
gaaaattcatcacttgcggtgtacacgggaaagccaggca |
446 |
Q |
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| T |
36289043 |
gaaaattcatcacttgcggtgtacacgggaaagccaggca |
36289004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 578 - 672
Target Start/End: Complemental strand, 36288882 - 36288788
Alignment:
| Q |
578 |
tatattttagtgtggggttgattatatggggttagagattgccagaatatgccgccgaaaaattgactcggttagtaaaaagttgactcatacgt |
672 |
Q |
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| T |
36288882 |
tatattttggtgtggggttgattatatggggttagagattgccagaatatggcgtcgaaaaattgactcggataataaaaagttgactcatacgt |
36288788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 313 - 446
Target Start/End: Complemental strand, 36300586 - 36300453
Alignment:
| Q |
313 |
caaagattcattttcaattgtttaagaatgcttggtgtgtctttgtttgtacgaggtatggttttgaggactagaatcgatctcatttgtggtggaaaat |
412 |
Q |
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||||||||||||||||||| ||| || ||| || |||| ||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||| ||| |
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| T |
36300586 |
caaagattcattttcaattttttgaggatgttttttgtgactttgttggtacgaggtatggttttgaagactaggattgatctcatttgtgttggagaat |
36300487 |
T |
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| Q |
413 |
tcatcacttgcggtgtacacgggaaagccaggca |
446 |
Q |
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| T |
36300486 |
tcatcactacaggcgtacatgggaaagccaggca |
36300453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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