View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_24 (Length: 372)
Name: NF6046_low_24
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 24468773 - 24469123
Alignment:
| Q |
18 |
gttcggtctgagatcgagagatcgtgggtttgaaacacttcttgtgctatatctggtgatgaaattactatggttgtaatttgacctagctttaaatgca |
117 |
Q |
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| T |
24468773 |
gttcggtccgagatcgagagatcatgggtttgaaacacttcttgtgctatatctggtgatgaaattactatagttgttatttgacctagctttaaatgca |
24468872 |
T |
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| Q |
118 |
ttattgggccatatattttggagaatttggctaatgagtattgtggnnnnnnncctaattcaaaaacatttctcataattgtaagaagtgaaggacctgg |
217 |
Q |
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| T |
24468873 |
ttattgggccatatattttggagaatttggctaatgagtattgtggtttttttcctaattcaaaaacatttctcataattgtaagaagtgaaggacctgg |
24468972 |
T |
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| Q |
218 |
tggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatac |
317 |
Q |
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| T |
24468973 |
tggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatac |
24469072 |
T |
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| Q |
318 |
atttctggattcatatttctatagcctaaagaggatatgatattttgatat |
368 |
Q |
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| T |
24469073 |
atttctggattcatattgctatagcctaaagaggatatgatattttgatat |
24469123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 48 - 324
Target Start/End: Original strand, 24490058 - 24490334
Alignment:
| Q |
48 |
tgaaacacttcttgtgctatatctggtgatgaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatttgg |
147 |
Q |
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| T |
24490058 |
tgaagcacttcttgtgctatatctggtgatgaaattactatggttgaaatttgacctagcttcaaatgcattattgggccatatattttggagaatttgg |
24490157 |
T |
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| Q |
148 |
ctaatgagtattgtggnnnnnnncctaattcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttct |
247 |
Q |
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| T |
24490158 |
ctaatgagtattgtggattttttcctaattcaaaaacatttcgtataattgtaagaggtgaaggacctggtggaagattgtacttttgttttttggttct |
24490257 |
T |
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| Q |
248 |
accaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctg |
324 |
Q |
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| T |
24490258 |
aagaatgagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacatttctg |
24490334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 54 - 326
Target Start/End: Original strand, 31137436 - 31137708
Alignment:
| Q |
54 |
acttcttgtgctatatctggtgatgaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatttggctaatg |
153 |
Q |
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| T |
31137436 |
acttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcattattggaccatatatttttgagaatttggctaatg |
31137535 |
T |
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| Q |
154 |
agtattgtggnnnnnnncctaattcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttctaccaat |
253 |
Q |
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| T |
31137536 |
attgttgtggtttttttcctaattcaaaaacgtttagcataattgcaagaggtgaaggtcctggtggaagattgtaattttgttttttggttctaccaat |
31137635 |
T |
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| Q |
254 |
gagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctgga |
326 |
Q |
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| T |
31137636 |
gagggaaataaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaatacatttttgga |
31137708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 34 - 326
Target Start/End: Complemental strand, 31151623 - 31151330
Alignment:
| Q |
34 |
agagatcgtgggtttgaaacacttcttgtgctatatctggtgatgaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatat |
133 |
Q |
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||||||| || ||||| | |||||||||||||| |||| ||| ||||||| ||||| || ||||| |||||||| | |||||||||||| |||||||| |
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| T |
31151623 |
agagatcatgtgtttgtagcacttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcattattggaccatatat |
31151524 |
T |
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| Q |
134 |
tttggagaatttggctaatgagtattgtggnnnnnnncctaa-ttcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtactt |
232 |
Q |
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||| ||||||||||||||||| | |||||| | || ||||||||| ||| |||||||| |||| ||||||| ||||||||||||||||| || |
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| T |
31151523 |
ttttgagaatttggctaatgattgttgtggttttttttccaagttcaaaaacgtttagcataattgcaagaggtgaaggtcctggtggaagattgtaatt |
31151424 |
T |
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| Q |
233 |
ttgttttttggttctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctgga |
326 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| | ||| | |||||||||| ||||||||||||||| |||| |
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| T |
31151423 |
ttgttttttggttctaccaatgagtgaaagaaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaatacatttttgga |
31151330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 45 - 319
Target Start/End: Complemental strand, 31129765 - 31129491
Alignment:
| Q |
45 |
gtttgaaacacttcttgtgctatatctggtgatgaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatt |
144 |
Q |
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||||||| |||||||||||||| |||| ||| ||||| |||||||||| ||||| ||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
31129765 |
gtttgaagcacttcttgtgctacttctgctgaagaaataactatggttgatatttgccctagctttaaatgcattattggaccatgtatttttgagaatt |
31129666 |
T |
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| Q |
145 |
tggctaatgagtattgtggnnnnnnncctaattcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggt |
244 |
Q |
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|||||||||| |||||||| |||||||||||||| ||| ||| ||||||| | ||||||| |||||||||||||| || ||||| |||||||| |
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| T |
31129665 |
tggctaatgaatattgtggtttttttcctaattcaaaaacgtttagcattattgtaaaacgtgaaggtcctggtggaagattatagttttggtttttggt |
31129566 |
T |
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| Q |
245 |
tctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacat |
319 |
Q |
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|||| | |||||||| ||| ||||||| ||||||| ||| ||| | |||||||||||||||||||||||| |
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| T |
31129565 |
tctagaatggagtgaaaaaaagtttatagatatgtatgctaatgtgaggaggagcattgtggttgcaaaatacat |
31129491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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