View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_25 (Length: 358)
Name: NF6046_low_25
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 52664239 - 52664555
Alignment:
| Q |
1 |
gacataacaagaagaagcgcgtcatgtgtgaatgcaatcaaacgtgatcaattatttattttgttagctg-------gcgtgtccataacattaaagagg |
93 |
Q |
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| T |
52664239 |
gacataacaagaagaagcgcgtcatgtgtgaatgcaatcaaacgtgatcaattgtttattttgttagctgttgacgtgcgtgtccataacattaaagagg |
52664338 |
T |
|
| Q |
94 |
tgacaagtataaatcaataaattatatttttaattgatttctgttnnnnnnnnnnnnnnnn-ctccaaataaacattggtagggttcttcttcctattat |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
52664339 |
tgacaagtataaatcaataaattatatttttaattgatttctgttaaaaataaaaataaaaactccaaataaacattgctagggttcttcttcctattat |
52664438 |
T |
|
| Q |
193 |
tcatccttatcttcatcaaattaaaaataaaaattcatattggtttaccgatcaactttcatcatcttcatccatattatcttcttttaaaaagaaattt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52664439 |
tcatccttatcttcatcaaattaaaaataaaaattcatattggttcactgatcaactttcatcatcttcatccatattatcttcttttaaaaagaaattt |
52664538 |
T |
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| Q |
293 |
agaaaattccaaattaa |
309 |
Q |
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||||||||||||||||| |
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| T |
52664539 |
agaaaattccaaattaa |
52664555 |
T |
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