View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_26 (Length: 351)
Name: NF6046_low_26
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_26 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 43927766 - 43928105
Alignment:
| Q |
12 |
atcaaatagatgttgaaaataacaattaccttgcttcgaacaacaatggaagtttttgcaccatggttaacaagatccaatgcaatttccataccagaat |
111 |
Q |
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| T |
43927766 |
atcaaatagatgttgaaaataacaattaccttgcttcgaacaacaatggaagtttttgcaccatggttaacaagatccaatgcaatttccataccagaat |
43927865 |
T |
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| Q |
112 |
tcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttcccagtaaaactcttcaacccatc |
211 |
Q |
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| T |
43927866 |
tcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttcccagtaaaactcttcaacccatc |
43927965 |
T |
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| Q |
212 |
aatttcaggtacaaaagggtcactagtttcaccactagctacaaccaaaaaccttccttcatattcctcaacctcaccagattccttattcttagccttc |
311 |
Q |
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| T |
43927966 |
aatttcaggtacaaaagggtcactagtttcaccactagctacaaccaaaaaccttccttcatattcctcaacctcaccagattccttattcttagccttc |
43928065 |
T |
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| Q |
312 |
accttccatttctcagaaccttcatcatactctgcattct |
351 |
Q |
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| T |
43928066 |
accttccatttctcagaaccttcatcatactctgcattct |
43928105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 93 - 324
Target Start/End: Original strand, 43939756 - 43939987
Alignment:
| Q |
93 |
gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttcccag |
192 |
Q |
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| T |
43939756 |
gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccctt |
43939855 |
T |
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| Q |
193 |
taaaactcttcaacccatcaatttcaggtacaaaagggtcactagtttcaccactagctacaaccaaaaaccttccttcatattcctcaacctcaccaga |
292 |
Q |
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| T |
43939856 |
tgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactagcaacaaccaagaaccttgcagaatactcctcaacttcaccaga |
43939955 |
T |
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| Q |
293 |
ttccttattcttagccttcaccttccatttct |
324 |
Q |
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| T |
43939956 |
actcttattctcagctttaaccctccatttct |
43939987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 82 - 324
Target Start/End: Complemental strand, 15608293 - 15608047
Alignment:
| Q |
82 |
caagatccaatgcaatttccataccagaattcccagacccaacaacaagaacatgtt----catctttaaactctttcccattcttaaacccagttgaat |
177 |
Q |
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|||||||||| ||| ||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
15608293 |
caagatccaaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaat |
15608194 |
T |
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| Q |
178 |
gaatcactttcccagtaaaactcttcaacccatcaatttcaggtacaaaagggtcactagtttcaccactagctacaaccaaaaaccttccttcatattc |
277 |
Q |
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| T |
15608193 |
gaatcacttccccattgcatctcttctacccttcaatttcaggcagaaaaggttcactagtttcgccactagccattaccaaaaaccttccatcatattc |
15608094 |
T |
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| Q |
278 |
ctcaacctcaccagattccttattcttagccttcaccttccatttct |
324 |
Q |
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| T |
15608093 |
ctcaacttcaccagaatccttattcatagccttcactttccatttct |
15608047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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