View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_28 (Length: 337)
Name: NF6046_low_28
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 1029850 - 1029544
Alignment:
| Q |
15 |
tcaatattacaaatgtaagtttgcatgtgtatgtctctgtgatactagaaatttcaataccttgtatcatggaactgtcaatttagttcacattccaaag |
114 |
Q |
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| T |
1029850 |
tcaatattacaaatgtaagtttgcatgtgtatgtctctgtgatactagaaatttcaataccttgtatcatgggactgtcaatttagttcacattccaaag |
1029751 |
T |
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| Q |
115 |
gagcagaatatatatgttgattttttgttgacaacatctcattcgcagttcgcactgaatatttcattttgggtttataatgttacagtgttttgtttca |
214 |
Q |
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| T |
1029750 |
gagcagaatatatatgttgattttttgttgacaacatctcattcgcagttcgcactgaatatttcattttgggtttataatgttacagtgttttgtttca |
1029651 |
T |
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| Q |
215 |
gaacattactcctatactaatctattcttgtataatacctttgttcaagtttaacttacgtggattcatatgtcttgtggttcaacttcaaaccattagg |
314 |
Q |
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| T |
1029650 |
gaacattactcctatactaatctattcttgtataatacctttgttcaagtttaacttacgtggattc--atgtcttgtggttcaacttcaaaccattagg |
1029553 |
T |
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| Q |
315 |
ctttctttg |
323 |
Q |
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||||||||| |
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| T |
1029552 |
ctttctttg |
1029544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 17344752 - 17344882
Alignment:
| Q |
9 |
ttatactcaatattacaaatgtaagtttgcatgtgtatgtctctgtgatactagaaatttca-ataccttgtatcatggaactgtcaatttagttcacat |
107 |
Q |
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| T |
17344752 |
ttattctcaatatgacaaatgtaagtttgcaaatgtatgcatctatgttactagaaatctcagatgccttgcaacatgatactatcgatttagttcacat |
17344851 |
T |
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| Q |
108 |
tccaaaggagcagaatatatatgttgatttt |
138 |
Q |
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| T |
17344852 |
tccaagggagcagattaaatgtgctgatttt |
17344882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 21237324 - 21237440
Alignment:
| Q |
23 |
acaaatgtaagtttgcatgtgtatgtctctgtgatactagaaatttca-ataccttgtatcatggaactgtcaatttagttcacattccaaaggagcaga |
121 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| ||| || |||| | ||||| ||| |||| |||||||||||||||| | |||| | |
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| T |
21237324 |
acaaatgtaagtttgcatgtgtatgtctctgtgttgctagaaatctcagatgtcttgaaccatgggactatcaacttagttcacattccaaggtagcata |
21237423 |
T |
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| Q |
122 |
atatatatgttgatttt |
138 |
Q |
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|||||| ||||| |||| |
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| T |
21237424 |
atatatgtgttggtttt |
21237440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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