View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_29 (Length: 332)
Name: NF6046_low_29
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 36284018 - 36283718
Alignment:
| Q |
18 |
agataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggataaaaataacaaaagagttatgaaaaataacacac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36284018 |
agataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggataaaaataacaaaagagttatgaaaaataagacac |
36283919 |
T |
|
| Q |
118 |
aatattcctatattaaaaatatcggtaaatagggcttttacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaagagat |
217 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36283918 |
aat--tcctatattaaaaatatcggtaaatagggctcttacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaggagat |
36283821 |
T |
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| Q |
218 |
ttgatatattttgttttacttctttattttcatgatcaaaatagataccaatacgcgcttctttcaatttgttcaaattctcaaccgcataactactcgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
36283820 |
ttgatatattttgttttacttctttattttcatgatcaaaatagataccaatacgtgcttctttcaatttgttcaaattctcaacctcataattactcgc |
36283721 |
T |
|
| Q |
318 |
ctt |
320 |
Q |
| |
|
||| |
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| T |
36283720 |
ctt |
36283718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 34554624 - 34554472
Alignment:
| Q |
156 |
tacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaagagatttgatatattttgttttacttctttattttcatgatca |
255 |
Q |
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||||||||||| || || ||||||||||||||| ||||||||| ||| |||||||| | ||||| |||||||| |||||||| ||||||||||| |||| |
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| T |
34554624 |
tacctctgtggtatacaaatctaagcaaagaaatctggttttacgaaccccattgaaaatatttgctatattttcttttacttttttattttcataatca |
34554525 |
T |
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| Q |
256 |
aaatagataccaatacgcgcttctttcaatttgttcaaattctcaaccgcata |
308 |
Q |
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|||| |||||||||| | ||||||||||| |||| ||||||||||||| |||| |
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| T |
34554524 |
aaatggataccaatatgtgcttctttcaaattgtccaaattctcaaccacata |
34554472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 34554882 - 34554768
Alignment:
| Q |
18 |
agataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggataaaaataacaaaagagttatgaaaaataacacac |
117 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||| || |
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| T |
34554882 |
agatgacccaaatgatcaaatgttggaaattctagacaagcataagtaagcacctgcaa-gtggataaaaataac-aaagaattatgagaaataacatac |
34554785 |
T |
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| Q |
118 |
aatattcctatattaaaaa |
136 |
Q |
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| ||||||||| |||||| |
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| T |
34554784 |
a--attcctatactaaaaa |
34554768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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