View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_32 (Length: 319)
Name: NF6046_low_32
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 54729624 - 54729359
Alignment:
| Q |
9 |
agcaaagggataaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctctctgatcgtttgagggtaaatct |
108 |
Q |
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| T |
54729624 |
agcaaaaggagaaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctttctgatcgtttgagggtaaatct |
54729525 |
T |
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| Q |
109 |
tgttttaccctttttatctttattaatggattagttgcatttggaagtaatattttgatacattttatgtatattgc------aattgttggaattttga |
202 |
Q |
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| T |
54729524 |
tcttttaccctttttatctttattaatggattagttgcatttggaagtagtattttgatacattttatgtatattgcaatattaattgttggaattttga |
54729425 |
T |
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| Q |
203 |
tgctactaaggaggtttaaggctgttgcttgattggtaatcttgtataagctccaacattccttga |
268 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54729424 |
tgctactaaggaggtttacggctgttgcttgattggtaatcttgtataagctctaacattccttga |
54729359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 5304015 - 5303750
Alignment:
| Q |
9 |
agcaaagggataaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctctctgatcgtttgagggtaaatct |
108 |
Q |
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| T |
5304015 |
agcaaaaggagaaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctctctgatcgtttgagggtaaatct |
5303916 |
T |
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| Q |
109 |
tgttttaccctttttatctttattaatggattagttgcatttggaagtaatattttgatacattttatgtatattgc------aattgttggaattttga |
202 |
Q |
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| T |
5303915 |
acttttaccctttttatctttattaatggattagttgcatttggaagtagtattttgatacattttatgtatattgcaatattaattgttggaattttga |
5303816 |
T |
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| Q |
203 |
tgctactaaggaggtttaaggctgttgcttgattggtaatcttgtataagctccaacattccttga |
268 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
5303815 |
tgctactaaggaggtttacggctgtttcttgattggtaatcttgtataagctctaacattccttga |
5303750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 26589925 - 26589878
Alignment:
| Q |
62 |
aagctcgttactccttctgttctctctgatcgtttgagggtaaatctt |
109 |
Q |
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|||||| | ||||||||||| |||||||||||||||||||||| |||| |
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| T |
26589925 |
aagctcatcactccttctgtcctctctgatcgtttgagggtaattctt |
26589878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 292166 - 292128
Alignment:
| Q |
71 |
actccttctgttctctctgatcgtttgagggtaaatctt |
109 |
Q |
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| T |
292166 |
actccttctgtcctctctgatcgtttgagggtaattctt |
292128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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