View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_33 (Length: 318)
Name: NF6046_low_33
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_33 |
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| [»] scaffold0534 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 3233976 - 3233686
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgctaaataataggccattaaaagatcccttttgctcaatccaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| | ||||||| || ||| ||||||||||||||||||| |
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| T |
3233976 |
gttttggcccatgcaagtctctcatgagacctttcaggctcaaatatgtttgctgctgccaaaaagtaggccaatagaagttcccttttgctcaatccaa |
3233877 |
T |
|
| Q |
119 |
actctcccaatctacattctgagtaccacctaatagatgtgatcattgcaacaatgagtattaactcaaggtgaatagaagaaaagcgatgataatggag |
218 |
Q |
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| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||| |
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| T |
3233876 |
attctcctaatctagattctgagtaccacctaataaatgtgatcattgcaacaatgagtattagctcgaggtgaatagaagaaaaacgatgataatcgag |
3233777 |
T |
|
| Q |
219 |
ttagacccgatctaaattttaagattaatcttacttttgaatcatgctccattcttttagatgttgtgcttggcaattgttgtagtataat |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
3233776 |
ttagacccaatctaaattttaagattaatcttacttttgaatcatgctccattcttttagatgttgtgtttggcagttgttgtagtctaat |
3233686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 3179464 - 3179752
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgctaaataataggccattaaaagatcccttttgctcaatccaa |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
3179464 |
gttttggcccatgcaagtctctcttgagacctttcaggctgaaatatgcttgctgctgctaaaaaataggacattaaaagatcccttttgctcaatccaa |
3179563 |
T |
|
| Q |
119 |
actctcccaatctacattctgagtaccacctaatagatgtgatcattgcaacaatgagtattaactcaaggtgaatagaagaaaagcgatgataatggag |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||| ||| | ||||||||| ||||||| || ||| |
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| T |
3179564 |
actctcccaatctacattctgagtaccacctaataaatgtgatcattgcagcaaggagtattagctcgagggggatagaagaagagcgatg---atcgag |
3179660 |
T |
|
| Q |
219 |
ttagacccgatctaaattttaagatt-aatcttacttttgaatcatgctccattcttttagatgttgtgcttggcaattgttgtagtataat |
309 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3179661 |
ttagacttgatctaaattttaagattaaatcttacttttggatcatgctccattcttttagatgttgtgcttggcaattgttgtagtctaat |
3179752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 3214365 - 3214090
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgctaaataataggccattaaaagatcccttttgctcaatccaa |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
3214365 |
gttttggcccatgcaagtctctcttgagacctttcaggctcaaatatactttctgctgctaaaaaataggccaataaaagatcccttttgctcaatccaa |
3214266 |
T |
|
| Q |
119 |
actctcccaatctacattctgagtaccacctaatagatgtgatcattgcaacaatgagtattaactcaaggtgaatagaagaaaagcgatgataatggag |
218 |
Q |
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|
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |||| ||||| | ||||||||||| ||| |||||| || |
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| T |
3214265 |
actctcccaatttagattctgagtaccacctaataaatgtgatcattgcaacaatgagcattagctcaaagggaatagaagaagagc---gataatcaag |
3214169 |
T |
|
| Q |
219 |
ttagacccgatctaaattttaagattaatcttacttttgaatcatgctccattcttttagatgttgtgcttggcaattg |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| | |||| |||||||||||||| |
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|
| T |
3214168 |
ttagacccgatctaaattttaagattaatcttacttttgagtcatgcttcactctttcaaatgtggtgcttggcaattg |
3214090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 37960400 - 37960333
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgctaaataata |
86 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||| ||||| | || ||||||| |||||| |
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| T |
37960400 |
gttttagcccatgcaagtctctctagagacctctcaggctcaaatatgttggccgctgctacataata |
37960333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 12634301 - 12634402
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgctaaataataggccattaaaagatcccttttgctcaatccaa |
118 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| || |||||| ||||||| || ||||||| |||||| || |||| ||| | ||||||||||||||| |
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| T |
12634301 |
gttttagcccatgcaagtctctctagagacctctcgggctcaaatatgctagccgctgctacataataagcaattaggagactctttttgctcaatccaa |
12634400 |
T |
|
| Q |
119 |
ac |
120 |
Q |
| |
|
|| |
|
|
| T |
12634401 |
ac |
12634402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 9200 - 9133
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgctaaataata |
86 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| |||||| |
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| T |
9200 |
gtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataata |
9133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 28049945 - 28049878
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgctaaataata |
86 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| |||||| |
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| T |
28049945 |
gtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataata |
28049878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 11239 - 11299
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgcttgctgctgcta |
79 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| |
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|
| T |
11239 |
gtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggcagctgcta |
11299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 3360 - 3311
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgct |
68 |
Q |
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|
||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |
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| T |
3360 |
gtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgct |
3311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 11911666 - 11911617
Alignment:
| Q |
19 |
gttttggcccatgcaagtctctcatgagacctttcaggctcatatatgct |
68 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |
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|
| T |
11911666 |
gtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgct |
11911617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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