View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_34 (Length: 315)
Name: NF6046_low_34
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 32282291 - 32281987
Alignment:
| Q |
1 |
ctcaatcctctcccaaagcagcctctgttactctgaagacacaaaatatctcatccgtgaccacctcctctctctcctcacaaactatccatcactcgaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
32282291 |
ctcaatcctctcccaaagcagcctttgttactccgaagacacaaaatttctcatccgtgaccacctcctctctctcctcacaaactatccaacactcaaa |
32282192 |
T |
|
| Q |
101 |
cctggaaccaacaccatgatttacaaaattagtcgccgcgccttcaacatagtccaagccgacggcactattcccatgacctacaaagctgtaacttacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32282191 |
cctggaaccaacaccatgatttacaaaattagtctcggcgccttcaacatagtccaagccgacagcactattcccatgacctacaaagctgtaacttacc |
32282092 |
T |
|
| Q |
201 |
atactccaatagttatttctctactggaatcttaccctcgtcaccctcctctagtctatcttaaccctccaccatatttaaaaatcaaactccatcatcc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32282091 |
atactccaatagttatttctctactggaatcttaccctcgtcaccctcctctagtctatcttaaccctccaccatatttgaaaatcaaactccatcatcc |
32281992 |
T |
|
| Q |
301 |
ctatg |
305 |
Q |
| |
|
|||| |
|
|
| T |
32281991 |
ttatg |
32281987 |
T |
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