View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_low_38 (Length: 280)

Name: NF6046_low_38
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_low_38
NF6046_low_38
[»] chr6 (38 HSPs)
chr6 (1-181)||(26861794-26861975)
chr6 (1-171)||(26884346-26884516)
chr6 (1-158)||(27592869-27593026)
chr6 (12-158)||(27718228-27718374)
chr6 (1-164)||(28786459-28786622)
chr6 (1-164)||(28792580-28792743)
chr6 (1-158)||(26802623-26802780)
chr6 (3-158)||(27604554-27604709)
chr6 (12-158)||(27610851-27610997)
chr6 (11-158)||(27706251-27706398)
chr6 (1-164)||(28781320-28781483)
chr6 (11-158)||(27677463-27677610)
chr6 (10-158)||(27698343-27698491)
chr6 (11-158)||(27679137-27679284)
chr6 (10-137)||(27427476-27427603)
chr6 (1-139)||(27531065-27531203)
chr6 (12-76)||(27724776-27724840)
chr6 (1-59)||(31284469-31284527)
chr6 (30-158)||(27214630-27214758)
chr6 (30-158)||(27234470-27234598)
chr6 (117-171)||(26646776-26646830)
chr6 (117-171)||(26752744-26752798)
chr6 (223-265)||(26862014-26862056)
chr6 (49-171)||(27337901-27338023)
chr6 (49-171)||(27398641-27398763)
chr6 (3-59)||(26848843-26848899)
chr6 (3-74)||(28098302-28098373)
chr6 (49-171)||(26656218-26656340)
chr6 (49-171)||(26762189-26762311)
chr6 (3-109)||(28234746-28234852)
chr6 (80-172)||(28325737-28325829)
chr6 (3-166)||(26949844-26950007)
chr6 (3-166)||(26959349-26959512)
chr6 (30-109)||(27665015-27665094)
chr6 (82-171)||(28297549-28297638)
chr6 (82-171)||(28514435-28514524)
chr6 (30-166)||(26635900-26636036)
chr6 (30-166)||(26741866-26742002)
[»] scaffold0277 (2 HSPs)
scaffold0277 (12-164)||(4514-4666)
scaffold0277 (1-164)||(13475-13638)
[»] scaffold0349 (2 HSPs)
scaffold0349 (12-158)||(14205-14351)
scaffold0349 (11-158)||(3269-3417)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-164)||(7706-7869)
[»] scaffold0003 (1 HSPs)
scaffold0003 (10-137)||(59760-59887)
[»] chr4 (6 HSPs)
chr4 (10-137)||(18073952-18074079)
chr4 (124-164)||(18679397-18679437)
chr4 (124-164)||(18723915-18723955)
chr4 (124-164)||(18655307-18655347)
chr4 (124-164)||(18699230-18699270)
chr4 (124-164)||(18731334-18731374)
[»] chr1 (2 HSPs)
chr1 (1-166)||(28127507-28127672)
chr1 (122-165)||(28164192-28164235)
[»] chr2 (2 HSPs)
chr2 (3-151)||(17993540-17993688)
chr2 (84-166)||(3279967-3280049)
[»] scaffold0038 (2 HSPs)
scaffold0038 (3-109)||(34908-35014)
scaffold0038 (80-172)||(117052-117144)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 26861794 - 26861975
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26861794 atcctactaatgtgcgacatcatagaggtatttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgatatggataacatggagaggttgca 26861893  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactt-acataaatcc 181  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26861894 gagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccacttaacataaatcc 26861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 26884346 - 26884516
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||    
T  26884346 atcctactgatgtgcgacatcatacaggtagttatggtgaagcattggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgca 26884445  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactt 171  Q
    | |||||||| | ||  |||  |||| |||||||||||| |||||||||||||||| |||||| |||||||    
T  26884446 gcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttagtcttgggtatcccactt 26884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 27593026 - 27592869
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | | |||||||||||||||||    
T  27593026 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgca 27592927  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    | |||||||||  || |||| ||| |||||||||||||| |||||||||  |||||||    
T  27592926 gggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcct 27592869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 27718374 - 27718228
Alignment:
Q  12 gtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| | | |||||||||||||||||||| |||||||||    
T  27718374 gtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaag 27718275  T
Q  112 ttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    | || |||| ||| |||||||||||||| |||||||||  |||||||    
T  27718274 tggctctgagccaggctgctaacttgtccggctaccatgatagtcct 27718228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28786459 - 28786622
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||||| |||| ||||||||||||||||||||  ||||||||| |||||||||||||| | |||||||||||||||||||||    
T  28786459 atcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgca 28786558  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
       ||||||  | || |||| |||||||||||||||||| |||||||||| |||||||||||||    
T  28786559 tcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcctgggtac 28786622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28792580 - 28792743
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||||| |||| ||||||||||||||||||||  ||||||||| |||||||||||||| | |||||||||||||||||||||    
T  28792580 atcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgca 28792679  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
       ||||||  | || |||| |||||||||||||||||| |||||||||| |||||||||||||    
T  28792680 tcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcctgggtac 28792743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 26802623 - 26802780
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||| ||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  26802623 atcctactaatgtgcgccatcatacatgtagctatggtgaagcattggctgagcatgaaaaaaggtttcaaaatgataaggataacatggagaggttgga 26802722  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    | |||||||||| || |||| ||| |||||||||||||| |||||||||  |||||||    
T  26802723 gcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 26802780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 27604709 - 27604554
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcaga 102  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||   |||||||||  |||||||||||     
T  27604709 ccttctcatgtgcgacatcataaaggtagttacggtcaagcattggctgagcataaaaaaaggtttcaaaatgatgaggataacataaagaggttgcagc 27604610  T
Q  103 gatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    |||||||||| || |||| ||| ||||||||||| || |||||||||  |||||||    
T  27604609 gatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 27604554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 27610997 - 27610851
Alignment:
Q  12 gtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| | | |||||||||||||||||||| |||||||||    
T  27610997 gtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagggatggaaag 27610898  T
Q  112 ttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    | || |||| ||| ||||| ||||| || |||||||||  |||||||    
T  27610897 tggctctgagccaggctgcaaacttttccggctaccatgatagtcct 27610851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 27706398 - 27706251
Alignment:
Q  11 tgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaa 110  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | | |||||||||||||||||| ||||||||    
T  27706398 tgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaa 27706299  T
Q  111 gttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    |  || |||| ||| |||||||||||||| |||||||||  |||||||    
T  27706298 gaggctctgagccaggctgctaacttgtccggctaccatgatagtcct 27706251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28781320 - 28781483
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||||| ||||  |||||||||||||||||||   |||||||| |||||||||||||| | |||||||||||||||||||||    
T  28781320 atcctactaatgtgcgacatcatacaggtccttatggtgaagcattggctggacatgaaaagaggtttcaaaatgataaggataacatggagaggttgca 28781419  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
       ||||||  | || |||| |||||||||||||||||| |||||||||| |||||||||||||    
T  28781420 tcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcctgggtac 28781483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 27677610 - 27677463
Alignment:
Q  11 tgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaa 110  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | | | |||||||||||||||| ||||||||    
T  27677610 tgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaa 27677511  T
Q  111 gttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    |  || |||| ||| |||||||||||||| |||||||||  |||||||    
T  27677510 gaggctctgagccaggctgctaacttgtccggctaccatgatagtcct 27677463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 27698491 - 27698343
Alignment:
Q  10 atgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaa 109  Q
    ||||| ||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||   | | |||||||||||||||||| |||||||    
T  27698491 atgtgagacatcataaaggtagttatggcaaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaa 27698392  T
Q  110 agttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    ||  || |||| ||| |||||||||||||| |||||||||  |||||||    
T  27698391 agaggctctgagccaggctgctaacttgtccggctaccatgatagtcct 27698343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 27679137 - 27679284
Alignment:
Q  11 tgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaa 110  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | | |||||||||||||||||  ||||||||    
T  27679137 tgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaa 27679236  T
Q  111 gttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
       || |||| ||| |||||||||||||| |||||||||  |||||||    
T  27679237 aaggctctgagccaggctgctaacttgtccggctaccatgatagtcct 27679284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 27427603 - 27427476
Alignment:
Q  10 atgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaa 109  Q
    ||||||||||||||| |||||| |||||| ||||||||||| |||||||||| |||||||||||||| | | | ||||||||||||||||||  ||||||    
T  27427603 atgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaa 27427504  T
Q  110 agttgccctgaaccaagctgctaacttg 137  Q
    ||| || ||||  |  ||||||||||||    
T  27427503 agtggctctgagtctggctgctaacttg 27427476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 27531203 - 27531065
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||| | |||||| |||||||||||||| |||  |||| |||||| |||||||||||| | ||||||||  |||||||||||    
T  27531203 atcctactgatgtgcgacatcacacaggtagatatggtgaagcattagctgtgcataaaaaaaagtttcaaaatgataaggataacactgagaggttgca 27531104  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtc 139  Q
    |  ||||||||  || |||| |||||| |||||||||||    
T  27531103 gcaatggaaagaagctctgagccaagcggctaacttgtc 27531065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 27724840 - 27724776
Alignment:
Q  12 gtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatga 76  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  27724840 gtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatga 27724776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31284469 - 31284527
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaa 59  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31284469 atccttctcatgtgcgacatcatagaggtagttatggagaagcattggctaagcatgaa 31284527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 27214630 - 27214758
Alignment:
Q  30 agttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctg 129  Q
    ||||||||||||||  | |||||||||||| | |||||||||||| | | ||| ||||||||| ||||||||| ||||||  | || || ||||||||||    
T  27214630 agttatggtgaagcgcttgctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctg 27214729  T
Q  130 ctaacttgtcaggctaccattttagtcct 158  Q
    ||||||| || ||||| |||| |||||||    
T  27214730 ctaacttatctggctatcattatagtcct 27214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 27234598 - 27234470
Alignment:
Q  30 agttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctg 129  Q
    ||||||||||||||  | |||||||||||| | |||||||||||| | | ||| ||||||||| ||||||||| ||||||  | || || ||||||||||    
T  27234598 agttatggtgaagcgcttgctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctg 27234499  T
Q  130 ctaacttgtcaggctaccattttagtcct 158  Q
    ||||||| || ||||| |||| |||||||    
T  27234498 ctaacttatctggctatcattatagtcct 27234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 26646776 - 26646830
Alignment:
Q  117 ctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactt 171  Q
    |||| |||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  26646776 ctgacccaagctgctaacttgtccggataccattatagtcctgggtaccccactt 26646830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 26752744 - 26752798
Alignment:
Q  117 ctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactt 171  Q
    |||| |||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  26752744 ctgacccaagctgctaacttgtccggataccattatagtcctgggtaccccactt 26752798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 26862014 - 26862056
Alignment:
Q  223 agagtaatctcatctttaaagttaaatcgaaaaccacattttt 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  26862014 agagtaatctcatctttaaagttaaatagaaaaccacattttt 26862056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 27338023 - 27337901
Alignment:
Q  49 ctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctacca 148  Q
    ||||||||||| | | ||| |||||| | | ||| ||||||||||||||| ||| ||||||  | || || | ||||||||||||||| || ||| ||||    
T  27338023 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27337924  T
Q  149 ttttagtcctgggtaccccactt 171  Q
    ||||||||  |||||||||||||    
T  27337923 ttttagtcaagggtaccccactt 27337901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 27398763 - 27398641
Alignment:
Q  49 ctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctacca 148  Q
    ||||||||||| | | ||| |||||| | | ||| ||||||||||||||| ||| ||||||  | || || | ||||||||||||||| || ||| ||||    
T  27398763 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27398664  T
Q  149 ttttagtcctgggtaccccactt 171  Q
    ||||||||  |||||||||||||    
T  27398663 ttttagtcaagggtaccccactt 27398641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 26848843 - 26848899
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaa 59  Q
    |||||||||||||||||||| ||  ||||||||||||||||| | ||||||||||||    
T  26848843 ccttctcatgtgcgacatcagaatagtagttatggtgaagcacttgctaagcatgaa 26848899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 28098373 - 28098302
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaat 74  Q
    |||||||| ||||||||||| |  || ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  28098373 ccttctcacgtgcgacatcagacggggagttatggtgaagcattagctaagcatgaagagaggttccaaaat 28098302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 171
Target Start/End: Original strand, 26656218 - 26656340
Alignment:
Q  49 ctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctacca 148  Q
    ||||||||||||| | ||| |||||| | | ||| |||||| |||||||| ||  ||||||  | || |||| | ||||||| |||||||| ||||||||    
T  26656218 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 26656317  T
Q  149 ttttagtcctgggtaccccactt 171  Q
    || |||||  |||||||||||||    
T  26656318 ttgtagtcaagggtaccccactt 26656340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 171
Target Start/End: Original strand, 26762189 - 26762311
Alignment:
Q  49 ctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctacca 148  Q
    ||||||||||||| | ||| |||||| | | ||| |||||| |||||||| ||  ||||||  | || |||| | ||||||| |||||||| ||||||||    
T  26762189 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 26762288  T
Q  149 ttttagtcctgggtaccccactt 171  Q
    || |||||  |||||||||||||    
T  26762289 ttgtagtcaagggtaccccactt 26762311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 28234746 - 28234852
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcaga 102  Q
    |||||||| ||||||||||| || || ||||||||| ||||| ||| | | |||  ||| | ||| |||||| | | |||||||||||||||||||||||    
T  28234746 ccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataacaaggataacatggagaggttgcaga 28234845  T
Q  103 gatggaa 109  Q
     ||||||    
T  28234846 aatggaa 28234852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 28325737 - 28325829
Alignment:
Q  80 ggataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactta 172  Q
    ||||| ||||||||||||||||| ||||||  | || || |  ||| |||||||||| |||||| ||||||| ||||||||||| || |||||    
T  28325737 ggatagcatggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccatttcagtcctgggtaacctactta 28325829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 26949844 - 26950007
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcaga 102  Q
    |||||||| ||||||||||| ||   |||||||||||||||| | |||||||||||| | ||||| |||||    |   | ||||||||| |||||| ||    
T  26949844 ccttctcacgtgcgacatcagaattatagttatggtgaagcacttgctaagcatgaagagaggttccaaaagagcaaaaaaaacatggagcggttgctga 26949943  T
Q  103 gatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccc 166  Q
     ||||||  | || |||||| ||| |||| |||| || ||||||||||| | || |||||||||    
T  26949944 aatggaagatagctctgaacaaagttgctgacttatctggctaccatttcaatcttgggtaccc 26950007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 26959349 - 26959512
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcaga 102  Q
    ||||||||||||||| | |  || || ||||||||||||||  | |||||||||||| |   ||||||||||   | ||| ||||||||| |||||| ||    
T  26959349 ccttctcatgtgcgaaaactaaatggcagttatggtgaagcgcttgctaagcatgaagagcagtttcaaaatagcaaggaaaacatggagcggttgctga 26959448  T
Q  103 gatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccc 166  Q
     ||||||    || || ||||||||||||||||| || ||| ||||||| | || |||||||||    
T  26959449 aatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtaccc 26959512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 27665094 - 27665015
Alignment:
Q  30 agttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaa 109  Q
    ||||||||||||||| | ||||||||||||     |||||||||||| ||||| ||||||||| |||||| || ||||||    
T  27665094 agttatggtgaagcacttgctaagcatgaagtggagtttcaaaatgacatggaaaacatggagcggttgctgaaatggaa 27665015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 28297638 - 28297549
Alignment:
Q  82 ataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactt 171  Q
    ||||||||||||||||||||| ||||||   ||| || |  ||| |||||||||| || ||| ||||||| | |||| ||||||||||||    
T  28297638 ataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtaccccactt 28297549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 28514435 - 28514524
Alignment:
Q  82 ataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactt 171  Q
    ||||||||||||||||||||| ||||||   ||| || |  ||| |||||||||| || ||| ||||||| | |||| ||||||||||||    
T  28514435 ataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtaccccactt 28514524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 26635900 - 26636036
Alignment:
Q  30 agttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctg 129  Q
    ||||||||||||||  | |||||||||||| |   ||||||||||   | ||| ||||||||| |||||| || ||||||    || || ||||||||||    
T  26635900 agttatggtgaagcgcttgctaagcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctg 26635999  T
Q  130 ctaacttgtcaggctaccattttagtcctgggtaccc 166  Q
    ||||||| || ||| ||||||| | || |||||||||    
T  26636000 ctaacttatctggccaccatttcaatcttgggtaccc 26636036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 26741866 - 26742002
Alignment:
Q  30 agttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaagttgccctgaaccaagctg 129  Q
    ||||||||||||||  | |||||||||||| |   ||||||||||   | ||| ||||||||| |||||| || ||||||    || || ||||||||||    
T  26741866 agttatggtgaagcgcttgctaagcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctg 26741965  T
Q  130 ctaacttgtcaggctaccattttagtcctgggtaccc 166  Q
    ||||||| || ||| ||||||| | || |||||||||    
T  26741966 ctaacttatctggccaccatttcaatcttgggtaccc 26742002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 4666 - 4514
Alignment:
Q  12 gtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaag 111  Q
    ||||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||||| | | |||||||||||||||||||   ||||||      
T  4666 gtgcgacatctgaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagt 4567  T
Q  112 ttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
    | || |||| |||||||||||||||||| |||||||||| ||||| |||||||    
T  4566 tggctctgacccaagctgctaacttgtccggctaccattctagtcatgggtac 4514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13638 - 13475
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||||| |||| ||||||||||||||||||||   |||||||| |||||||||||||| | | ||||||||||| | |||||    
T  13638 atcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgca 13539  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
       ||||||  | || |||| |||||||||||||||||| |||||||||| ||||| |||||||    
T  13538 tcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcatgggtac 13475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 14351 - 14205
Alignment:
Q  12 gtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | | |||||||||||||||||| |||||||||    
T  14351 gtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaag 14252  T
Q  112 ttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
      || |||| ||| |||||||||||||| |||||||||  |||||||    
T  14251 aggctctgagccaggctgctaacttgtccggctaccatgatagtcct 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 3417 - 3269
Alignment:
Q  11 tgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatg-gataacatggagaggttgcagagatggaa 109  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||   |  | |||||||||||||||||| |||||||    
T  3417 tgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaa 3318  T
Q  110 agttgccctgaaccaagctgctaacttgtcaggctaccattttagtcct 158  Q
    ||| || |||| ||| |||||||||||||| |||||||||  |||||||    
T  3317 agtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 3269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 7706 - 7869
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || ||||||||||||||| |||| ||||||||||||||||||||   |||||||| |||||||||||||| | | ||||||||||| | |||||    
T  7706 atcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgca 7805  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
       ||||||  | || |||| |||||||||||||||||| |||||||||| ||||| |||||||    
T  7806 tcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcatgggtac 7869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 59760 - 59887
Alignment:
Q  10 atgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaa 109  Q
    ||||||||||||||| |||||| |||||| ||||||||||| |||||||||| |||||||||||||| | | | ||||||||||||||||||  ||||||    
T  59760 atgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaa 59859  T
Q  110 agttgccctgaaccaagctgctaacttg 137  Q
    ||| || ||||  |  ||||||||||||    
T  59860 agtggctctgagtctggctgctaacttg 59887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 18073952 - 18074079
Alignment:
Q  10 atgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcagagatggaa 109  Q
    ||||||||||||||| |||||| |||||| ||||||||||| |||||||||| |||||||||||||| | | | ||||||||||||||||||  ||||||    
T  18073952 atgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaa 18074051  T
Q  110 agttgccctgaaccaagctgctaacttg 137  Q
    ||| || ||||  |  ||||||||||||    
T  18074052 agtggctctgagtctggctgctaacttg 18074079  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 18679437 - 18679397
Alignment:
Q  124 aagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  18679437 aagctgctaacttgtccggctaccattttagtcctgggtac 18679397  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 18723955 - 18723915
Alignment:
Q  124 aagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  18723955 aagctgctaacttgtccggctaccattttagtcctgggtac 18723915  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 18655347 - 18655307
Alignment:
Q  124 aagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  18655347 aagctgctaacttgtccggctaccattctagtcctgggtac 18655307  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 18699270 - 18699230
Alignment:
Q  124 aagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  18699270 aagctgctaacttgtccggctaccattttagttctgggtac 18699230  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 18731374 - 18731334
Alignment:
Q  124 aagctgctaacttgtcaggctaccattttagtcctgggtac 164  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  18731374 aagctgctaacttgtccggctaccattttagtcatgggtac 18731334  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 28127672 - 28127507
Alignment:
Q  1 atccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgca 100  Q
    ||||| || |||||||| |||||| ||| |||||||||||||   | |||||||||| | | ||||| |||||| | | | | ||||||||| | |||||    
T  28127672 atcctactgatgtgcgatatcatacagggagttatggtgaagagcttgctaagcatggagagaggttccaaaataacaagaaaaacatggagcgattgca 28127573  T
Q  101 gagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccc 166  Q
       ||||||  | || || | |||||||||||||||||| |||||||||| |||||| ||||||||    
T  28127572 ccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtccagggtaccc 28127507  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 28164235 - 28164192
Alignment:
Q  122 ccaagctgctaacttgtcaggctaccattttagtcctgggtacc 165  Q
    |||||||||||||||||| |||||||||| |||||| |||||||    
T  28164235 ccaagctgctaacttgtccggctaccattatagtccagggtacc 28164192  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 17993688 - 17993540
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcaga 102  Q
    |||||||| ||||||||||| || | |||||||||||||||| | |||||||||||| |  | |||||||||   | ||| ||||||||| |||||  ||    
T  17993688 ccttctcaggtgcgacatcagaatgatagttatggtgaagcacttgctaagcatgaagagggttttcaaaatagcaaggaaaacatggagcggttgttga 17993589  T
Q  103 gatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattt 151  Q
     ||||||    || || ||||||||||||||||| || ||| |||||||    
T  17993588 aatggaagaaagctcttaaccaagctgctaacttatctggccaccattt 17993540  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 3279967 - 3280049
Alignment:
Q  84 aacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccc 166  Q
    |||||| |||||||||| | ||||||  | || || |||||||| ||||||||||| ||| ||||||||| |||| |||||||    
T  3279967 aacatgaagaggttgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccattttaatcctaggtaccc 3280049  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 34908 - 35014
Alignment:
Q  3 ccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgaaatggataacatggagaggttgcaga 102  Q
    |||||||| ||||||||||| || || ||||||||| ||||| ||| | | |||  ||| | ||| |||||| | | |||||||||||||||||||||||    
T  34908 ccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataacaaggataacatggagaggttgcaga 35007  T
Q  103 gatggaa 109  Q
     ||||||    
T  35008 aatggaa 35014  T

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Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 117052 - 117144
Alignment:
Q  80 ggataacatggagaggttgcagagatggaaagttgccctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactta 172  Q
    ||||| ||||||||||||||||| ||||||  | || || |  ||| |||||||||| |||||| ||||||| ||||||||||| || |||||    
T  117052 ggatagcatggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccatttcagtcctgggtaacctactta 117144  T

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