View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_low_4 (Length: 590)

Name: NF6046_low_4
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_low_4
NF6046_low_4
[»] chr7 (23 HSPs)
chr7 (14-222)||(6634423-6634631)
chr7 (275-424)||(6634678-6634827)
chr7 (451-573)||(6634987-6635109)
chr7 (456-529)||(22197991-22198064)
chr7 (456-529)||(22239757-22239830)
chr7 (448-565)||(30216079-30216196)
chr7 (444-529)||(982954-983039)
chr7 (448-529)||(19277298-19277379)
chr7 (448-527)||(21326859-21326938)
chr7 (448-574)||(27521431-27521557)
chr7 (457-529)||(40726510-40726582)
chr7 (457-523)||(48539192-48539258)
chr7 (448-529)||(4501264-4501344)
chr7 (448-529)||(5825278-5825359)
chr7 (448-529)||(28517308-28517389)
chr7 (466-569)||(34772747-34772849)
chr7 (448-529)||(43856879-43856960)
chr7 (470-529)||(47679130-47679189)
chr7 (472-529)||(5972261-5972318)
chr7 (448-529)||(24527594-24527675)
chr7 (448-529)||(32584606-32584687)
chr7 (457-529)||(42295214-42295286)
chr7 (457-521)||(45613872-45613936)
[»] chr4 (19 HSPs)
chr4 (459-573)||(34107728-34107842)
chr4 (442-574)||(56462121-56462253)
chr4 (448-529)||(7536592-7536673)
chr4 (457-529)||(50483226-50483298)
chr4 (450-529)||(55933485-55933562)
chr4 (448-529)||(600713-600794)
chr4 (444-529)||(12918389-12918474)
chr4 (448-529)||(53619591-53619672)
chr4 (479-528)||(54190903-54190952)
chr4 (457-529)||(3330001-3330073)
chr4 (478-529)||(53170518-53170569)
chr4 (448-529)||(50000946-50001028)
chr4 (449-529)||(46440911-46440991)
chr4 (466-528)||(48656949-48657012)
chr4 (448-509)||(30940760-30940820)
chr4 (465-529)||(31847092-31847156)
chr4 (465-576)||(46391353-46391461)
chr4 (457-529)||(50462976-50463048)
chr4 (457-529)||(53098426-53098498)
[»] chr3 (21 HSPs)
chr3 (448-529)||(53785714-53785795)
chr3 (466-576)||(25324987-25325097)
chr3 (448-529)||(52741533-52741614)
chr3 (465-530)||(54508422-54508487)
chr3 (457-529)||(7900863-7900935)
chr3 (465-529)||(51234621-51234685)
chr3 (448-529)||(37133020-37133101)
chr3 (448-573)||(38146017-38146142)
chr3 (448-573)||(39583250-39583375)
chr3 (449-568)||(49017929-49018048)
chr3 (439-529)||(26772763-26772853)
chr3 (432-529)||(26856767-26856864)
chr3 (455-529)||(3443340-3443414)
chr3 (456-529)||(7502040-7502114)
chr3 (448-529)||(38670901-38670982)
chr3 (457-529)||(32546800-32546872)
chr3 (459-529)||(44198772-44198842)
chr3 (448-573)||(4473023-4473147)
chr3 (452-529)||(38978824-38978901)
chr3 (465-529)||(5338648-5338712)
chr3 (457-529)||(43123150-43123222)
[»] chr8 (14 HSPs)
chr8 (457-567)||(35740016-35740126)
chr8 (457-567)||(24124995-24125105)
chr8 (448-529)||(3187974-3188055)
chr8 (448-530)||(6592579-6592661)
chr8 (448-529)||(38815299-38815380)
chr8 (465-573)||(28196153-28196261)
chr8 (457-529)||(37514226-37514298)
chr8 (448-529)||(4073539-4073621)
chr8 (449-529)||(8540399-8540479)
chr8 (457-525)||(25021844-25021912)
chr8 (448-516)||(39434685-39434753)
chr8 (454-529)||(4097370-4097445)
chr8 (448-527)||(6618291-6618370)
chr8 (457-525)||(36004131-36004199)
[»] chr1 (15 HSPs)
chr1 (448-573)||(45659669-45659792)
chr1 (448-529)||(29169814-29169895)
chr1 (468-567)||(2898669-2898768)
chr1 (448-529)||(21473008-21473089)
chr1 (457-529)||(28041157-28041229)
chr1 (457-529)||(31737353-31737425)
chr1 (465-529)||(34644571-34644635)
chr1 (448-529)||(20259818-20259899)
chr1 (448-529)||(22346900-22346981)
chr1 (457-529)||(2764484-2764556)
chr1 (457-529)||(24177541-24177613)
chr1 (470-529)||(4862032-4862091)
chr1 (450-529)||(16500039-16500118)
chr1 (448-516)||(19035465-19035533)
chr1 (465-529)||(47459687-47459751)
[»] chr6 (9 HSPs)
chr6 (448-529)||(33220732-33220813)
chr6 (448-529)||(959585-959666)
chr6 (448-529)||(4165943-4166024)
chr6 (448-529)||(4206617-4206698)
chr6 (448-529)||(34304501-34304582)
chr6 (457-529)||(17249335-17249407)
chr6 (448-529)||(45698-45779)
chr6 (448-529)||(29338100-29338181)
chr6 (469-529)||(28625935-28625995)
[»] chr5 (18 HSPs)
chr5 (448-529)||(37873659-37873740)
chr5 (457-573)||(32269827-32269943)
chr5 (459-529)||(22188687-22188757)
chr5 (448-574)||(42921657-42921783)
chr5 (448-529)||(13166931-13167012)
chr5 (459-529)||(25663064-25663134)
chr5 (448-529)||(14423687-14423764)
chr5 (457-529)||(34335342-34335414)
chr5 (457-527)||(14723274-14723344)
chr5 (444-529)||(27336698-27336783)
chr5 (448-529)||(33692076-33692157)
chr5 (448-529)||(43129539-43129620)
chr5 (457-529)||(430607-430679)
chr5 (457-529)||(35310453-35310525)
chr5 (457-573)||(38875599-38875715)
chr5 (448-527)||(35455963-35456042)
chr5 (466-522)||(7716193-7716250)
chr5 (448-529)||(15292047-15292128)
[»] chr2 (13 HSPs)
chr2 (448-529)||(4413087-4413168)
chr2 (448-573)||(17344599-17344724)
chr2 (457-529)||(28225005-28225077)
chr2 (457-527)||(20142755-20142825)
chr2 (457-567)||(41867938-41868048)
chr2 (448-529)||(9685436-9685517)
chr2 (448-573)||(18744975-18745100)
chr2 (448-503)||(19161804-19161859)
chr2 (479-573)||(13413312-13413406)
chr2 (469-529)||(13147142-13147202)
chr2 (465-528)||(3825732-3825795)
chr2 (448-527)||(29808082-29808160)
chr2 (458-529)||(44686421-44686492)
[»] scaffold0009 (1 HSPs)
scaffold0009 (457-529)||(103111-103183)
[»] scaffold0148 (1 HSPs)
scaffold0148 (448-529)||(33255-33336)
[»] scaffold1768 (1 HSPs)
scaffold1768 (460-573)||(217-330)
[»] scaffold0490 (1 HSPs)
scaffold0490 (448-529)||(6339-6420)
[»] scaffold0186 (1 HSPs)
scaffold0186 (458-529)||(10365-10436)
[»] scaffold0470 (1 HSPs)
scaffold0470 (448-527)||(7609-7688)
[»] scaffold0031 (1 HSPs)
scaffold0031 (444-499)||(49446-49501)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 6634423 - 6634631
Alignment:
Q  14 catcattcttagcctcaacaaagtagaaaaagagtgcttttttgttttgatcatcaacatttacataacctgaaaagtgatgaaaatcaacatgtggttg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6634423 catcattcttagcctcaacaaagtagaaaaagagtgcttttttgttttgatcatcaacatttacataacctgaaaactgatgaaaatcaacatgtggttg 6634522  T
Q  114 accaggtaaatttgtgatcttattagggtgtgaaactgcaaaggaacattggtgaagcataattgcagcaacacacattgcaatagaacaacaaagtaga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6634523 accaggtaaatttgtgatcttattagggtgtgaaactgcaaaggaacattggtgaagtataattgcagcaacacacattgcaatagaacaacaaagtaga 6634622  T
Q  214 aaagacatg 222  Q
    |||||||||    
T  6634623 aaagacatg 6634631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 275 - 424
Target Start/End: Original strand, 6634678 - 6634827
Alignment:
Q  275 agttgcagcaagtactcaaaaagcttagtgttaagtgtgatgcttctgttccttgtatataaagtacaaaagtttttaccttttgttgatttgggtttca 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6634678 agttgcagcaagtactcaaaaagcttagtgttaagtgtgatgcttctgttccttgtatataaagtacaaaagtttttaccttttgttgatttgggtttca 6634777  T
Q  375 ccacttattgaattagggtagtcttttcacggttggacagacggtcttaa 424  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  6634778 ccatttattgaattagggtagtcttttcatggttggacagacggtgttaa 6634827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 451 - 573
Target Start/End: Original strand, 6634987 - 6635109
Alignment:
Q  451 gttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcat 550  Q
    ||||||||||||| ||| ||||||||  |||||||||||||| |||||||||| |||||||||||||||||||||||||  ||||||||||||||||| |    
T  6634987 gttttaacaatcaacatatttttatatcatttgcttttgacagtttcgattttttagcatcagaggttgttgaccttctacgtaaaattaaaataatctt 6635086  T
Q  551 gcataacaatgtcatgtttccta 573  Q
    ||||||||||||||||| |||||    
T  6635087 gcataacaatgtcatgtctccta 6635109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 22198064 - 22197991
Alignment:
Q  456 aacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||| ||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  22198064 aacaatcaacatgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttct 22197991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 22239757 - 22239830
Alignment:
Q  456 aacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||| ||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  22239757 aacaatcaacatgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttct 22239830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 448 - 565
Target Start/End: Original strand, 30216079 - 30216196
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||| ||||    |||| || ||||  |    
T  30216079 cgtgttttgacaatcaacatgtttttataccatttgcttttgacactttcggtttcctagcatcagagtttgttgatcttccacataaagttcaaatggt 30216178  T
Q  548 catgcataacaatgtcat 565  Q
    |||||||| |||||||||    
T  30216179 catgcatagcaatgtcat 30216196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 444 - 529
Target Start/End: Complemental strand, 983039 - 982954
Alignment:
Q  444 aaatcgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||||| | ||||||| |||| |||||||| |||||||||||| ||||||| |||||||||| |||||||||||| ||||||    
T  983039 aaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggccttct 982954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 19277379 - 19277298
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||| ||| |||||| |||||||||||||||||||    
T  19277379 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttct 19277298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 527
Target Start/End: Original strand, 21326859 - 21326938
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacctt 527  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  21326859 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctagcaccagaggctgttgacctt 21326938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 448 - 574
Target Start/End: Complemental strand, 27521557 - 27521431
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||| | ||||||| ||||  ||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||   || | || |||   |    
T  27521557 cgtgttctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacatagagttcaaaaggt 27521458  T
Q  548 catgcataacaatgtcatgtttcctaa 574  Q
    |||||||||||||||||||| ||||||    
T  27521457 catgcataacaatgtcatgtctcctaa 27521431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 40726510 - 40726582
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||  ||  |||||||||||||||||||||||||    
T  40726510 acaatcaacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgaccttct 40726582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 523
Target Start/End: Complemental strand, 48539258 - 48539192
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttga 523  Q
    ||||||| |||| |||||||| |||||||||||||||||||| |||||||||| |||||| ||||||    
T  48539258 acaatcaacatgcttttataccatttgcttttgacactttcggttttctagcaccagaggctgttga 48539192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 4501344 - 4501264
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||  |||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  4501344 cgtgttctgacaatcaacatgcttttatataatttgcttttgacactttgg-ttttctagcaccagaggttgttgaccttct 4501264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 5825359 - 5825278
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||||||| |||| |||||||||||||||   | |||||| |||||||||||||||||||    
T  5825359 cgtgttatgacaatcaacatgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttct 5825278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 28517308 - 28517389
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||  ||||||| ||||||||||||| |||||||||||||||||| || || ||||||||||||   |||||||||||    
T  28517308 cgtgtttagacaatcaacatgtttttataccatttgcttttgacacttttgacttcctagcatcagagacagttgaccttct 28517389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 569
Target Start/End: Complemental strand, 34772849 - 34772747
Alignment:
Q  466 atgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataacaatgtcat 565  Q
    |||||||||||| |||||||||||| |||||| ||||  ||| || ||||||||||||||||||   |||| || ||| | ||||||||| |||||||||    
T  34772849 atgtttttataccatttgcttttgaaactttcaatttcttag-attagaggttgttgaccttctacataaacttcaaaaagtcatgcatatcaatgtcat 34772751  T
Q  566 gttt 569  Q
    ||||    
T  34772750 gttt 34772747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 43856960 - 43856879
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||| ||||||| ||||  ||||||| |||||||||||||| ||| | ||| ||| || |||||||||||||||||||    
T  43856960 cgtgttttgacaatcaacatgcgtttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttct 43856879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 529
Target Start/End: Complemental strand, 47679189 - 47679130
Alignment:
Q  470 ttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||| |||||| ||||||| ||||| ||| ||||||||| ||||||||||||||||    
T  47679189 ttttatactatttgcgtttgacattttcggtttcctagcatcacaggttgttgaccttct 47679130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 5972261 - 5972318
Alignment:
Q  472 ttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| ||||| |||||||| ||||  |||||||| |||||||||||||||||||||    
T  5972261 ttataccatttgtttttgacattttcatttttctagtatcagaggttgttgaccttct 5972318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 24527675 - 24527594
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||  ||| ||||||  |||||  |||||||||||    
T  24527675 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagcacgagaggcggttgaccttct 24527594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 32584687 - 32584606
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | |||||||  ||| ||||| || ||||||||||||||||||   ||| |||||| |||||||||||||||||||    
T  32584687 cgtgttctgacaatcaagatgcttttacaccatttgcttttgacactttatgtttcctagcaccagaggttgttgaccttct 32584606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 42295214 - 42295286
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| ||||||||||||| ||||| |||| | ||||||| ||| ||| || ||| |||||||||||||||    
T  42295214 acaatcaacatgtttttataccatttgttttttatactttcggtttcctaacaccaggggttgttgaccttct 42295286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 521
Target Start/End: Original strand, 45613872 - 45613936
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgtt 521  Q
    ||||||| ||||||||||||| ||||| |||||||||||||| ||| | |||| |||||| ||||    
T  45613872 acaatcaacatgtttttataccatttgattttgacactttcggtttccaagcaccagaggctgtt 45613936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 459 - 573
Target Start/End: Original strand, 34107728 - 34107842
Alignment:
Q  459 aatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataaca 558  Q
    ||||| ||||||||||||| ||||| |||||||||||||||||| |||||| |||||| ||||||||||||   || | || ||| | ||||||||||||    
T  34107728 aatcaacatgtttttataccatttgtttttgacactttcgatttcctagcaccagaggctgttgaccttctacatagagttcaaaaagtcatgcataaca 34107827  T
Q  559 atgtcatgtttccta 573  Q
    |||| |||| |||||    
T  34107828 atgttatgtctccta 34107842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 442 - 574
Target Start/End: Original strand, 56462121 - 56462253
Alignment:
Q  442 ataaatcgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaa 541  Q
    ||||| |||||| | ||||||| ||||||||||||| ||||| ||| |||||||| | ||| |||||| |||||||||||||||||||   || | || |    
T  56462121 ataaagcgtgttctgacaatcaacatgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacatagagttca 56462220  T
Q  542 aataatcatgcataacaatgtcatgtttcctaa 574  Q
    ||  ||||||||| |||||||||||| ||||||    
T  56462221 aaggatcatgcatgacaatgtcatgtctcctaa 56462253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 7536592 - 7536673
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||| ||||||| ||||||||||||| ||||| |||||||| ||||  ||| |||||| |||||||||||||||||||    
T  7536592 cgtgttttgacaatcaacatgtttttatacaatttgtttttgacaatttcagtttcctagcaccagaggttgttgaccttct 7536673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 50483226 - 50483298
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| ||||||||| |||||||||| ||| |||||| |||||||||||||||||||    
T  50483226 acaatcaacatgattttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttct 50483298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 529
Target Start/End: Original strand, 55933485 - 55933562
Alignment:
Q  450 tgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| ||||||||| |||| |||||||| ||||||||||||||||||||| || ||||||||  ||||||||||||||||    
T  55933485 tgttctaacaatcaacatgcttttataccatttgcttttgacactttcgacttcctagcatc--aggttgttgaccttct 55933562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 600713 - 600794
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| ||||||| | |||| |||||||| ||||||||||| |||||||| ||| ||| || |||||||||||||||||||    
T  600713 cgtgttctaacaattaacatgcttttataccatttgcttttgtcactttcggtttcctaacaccagaggttgttgaccttct 600794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 529
Target Start/End: Original strand, 12918389 - 12918474
Alignment:
Q  444 aaatcgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||||| | ||||||| ||   |||||||| |||| |||||||||||||||| || |||||||||||| |||||||||||||    
T  12918389 aaatcgtgttctgacaatcaacacacttttatactatttacttttgacactttcgacttcctagcatcagagattgttgaccttct 12918474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 53619672 - 53619591
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| ||||| |||||||||||| || || |||||||||||||  |||||||||||    
T  53619672 cgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttcctagcatcagaggcagttgaccttct 53619591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 54190903 - 54190952
Alignment:
Q  479 atttgcttttgacactttcgattttctagcatcagaggttgttgaccttc 528  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  54190903 atttgcttttgacacttttgactttctagtatcagaggttgttgaccttc 54190952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 3330073 - 3330001
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| |||||||||||||||||| |  || |||||||||||||  |||||||||||    
T  3330073 acaatcaacatgcttttatactatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttct 3330001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 53170569 - 53170518
Alignment:
Q  478 gatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||||||||||||||||| ||| |||||| |||||| ||||||||||||    
T  53170569 gatttgcttttgacactttcggtttgctagcaccagaggctgttgaccttct 53170518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 50000946 - 50001028
Alignment:
Q  448 cgtgttttaacaatcatcatgttttta-tacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| ||||| ||| |||||||||||||||||| |  ||||||||||||||||  |||||||||||    
T  50000946 cgtgttctgacaatcaacatgcttttaatacaatttgcttttgacacttttggctttctagcatcagaggcagttgaccttct 50001028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 529
Target Start/End: Original strand, 46440911 - 46440991
Alignment:
Q  449 gtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||| ||||||| | || |||||||||  ||||||||||||||||||||  || ||||||||||| | || |||||||||    
T  46440911 gtgttctaacaattaacacgtttttatatcatttgcttttgacactttcggcttcctagcatcagaagctgctgaccttct 46440991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 528
Target Start/End: Original strand, 48656949 - 48657012
Alignment:
Q  466 atgtttttatacgatttgcttttgacactttcgattttctagc-atcagaggttgttgaccttc 528  Q
    |||||||||||| ||||| ||||||||||||||| ||  |||| || |||||||||||||||||    
T  48656949 atgtttttataccatttgtttttgacactttcgacttcttagcgattagaggttgttgaccttc 48657012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 30940760 - 30940820
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagca 509  Q
    |||||| | ||||||| |||| |||||||| ||| |||||||||||||||||||| ||||||    
T  30940760 cgtgttctgacaatcaacatgcttttataccatt-gcttttgacactttcgatttcctagca 30940820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 31847156 - 31847092
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||||| ||| |||||||||||||||||| |  || ||||||||||| |  |||||||||||    
T  31847156 catgtttttttaccatttgcttttgacacttttggcttcctagcatcagaagcggttgaccttct 31847092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 576
Target Start/End: Original strand, 46391353 - 46391461
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataacaatgtca 564  Q
    ||||||||||||| ||| |||| | ||| ||||||||| ||| ||  ||||||||||||||||||   |||| || |||  |||||||  ||||||||||    
T  46391353 catgtttttataccatt-gcttgtaacattttcgatttcctatcagtagaggttgttgaccttctacataaagttcaaaagatcatgc--aacaatgtca 46391449  T
Q  565 tgtttcctaaat 576  Q
    ||| ||||||||    
T  46391450 tgtctcctaaat 46391461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 50462976 - 50463048
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| ||| |||| |||||||||||||||||| ||||| ||  || |||||  ||||||||||||    
T  50462976 acaatcaacatgctttcataccatttgcttttgacacttttgatttccttacaccagagactgttgaccttct 50463048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 53098498 - 53098426
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||||||||  ||  ||| ||||||||| ||| | ||| |||||||||||||||||| |||||||    
T  53098498 acaatcaacatgtttttgaaccgtttccttttgacatttttggtttcctagcatcagaggttgttaaccttct 53098426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 53785795 - 53785714
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||| ||| |||||| |||||||||||||||||||    
T  53785795 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttct 53785714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 466 - 576
Target Start/End: Complemental strand, 25325097 - 25324987
Alignment:
Q  466 atgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataacaatgtcat 565  Q
    |||||||||||| |||||||||  ||||||||||||| |||||| || || |||||||||||||   || | || |||| |||||||||| ||||||||     
T  25325097 atgtttttataccatttgctttcaacactttcgatttcctagcaccatagattgttgaccttctacatagagttcaaatgatcatgcatagcaatgtcaa 25324998  T
Q  566 gtttcctaaat 576  Q
    |||||||||||    
T  25324997 gtttcctaaat 25324987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 52741533 - 52741614
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||| | ||| |||||| |||||||||||||||||||    
T  52741533 cgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttct 52741614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 465 - 530
Target Start/End: Original strand, 54508422 - 54508487
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctg 530  Q
    ||||||||||||  |||||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  54508422 catgtttttatatcatttgcttttgacatttttgattttctagcaccagaggttgttgaccttctg 54508487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 7900935 - 7900863
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| ||||| ||||||||||||||  || ||||||||||||||||||||||||||    
T  7900935 acaatcaacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttct 7900863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 51234685 - 51234621
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| |||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  51234685 catgcttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttct 51234621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 37133020 - 37133101
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||||||| ||||| |||| ||||||||| |||  ||||| |||||||||||||||||||    
T  37133020 cgtgttctgacaatcaacatgtttttataccatttgttttttacactttcggtttcttagcaccagaggttgttgaccttct 37133101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 573
Target Start/End: Complemental strand, 38146142 - 38146017
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||||| ||||||| ||||||||||||| |||| | ||||||||||| || || |||||| ||||||||||| || ||||   || | || |||   |    
T  38146142 cgtgttttgacaatcaacatgtttttataccatttacatttgacacttttgacttcctagcaccagaggttgtttacattctacttagagttcaaagggt 38146043  T
Q  548 catgcataacaatgtcatgtttccta 573  Q
    |||||||||||||||||||| |||||    
T  38146042 catgcataacaatgtcatgtctccta 38146017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 573
Target Start/End: Original strand, 39583250 - 39583375
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||| | ||||||| |||| |||||||  ||||| ||| |||||||||| ||| ||||||||| |||||||||||||||||  || | || |||   |    
T  39583250 cgtgttctgacaatcaacatgcttttatatcatttgttttcgacactttcggtttcctagcatcataggttgttgaccttctgcatagagttcaaagggt 39583349  T
Q  548 catgcataacaatgtcatgtttccta 573  Q
    |||||||| ||||||||||| |||||    
T  39583350 catgcatagcaatgtcatgtctccta 39583375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 568
Target Start/End: Complemental strand, 49018048 - 49017929
Alignment:
Q  449 gtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatc 548  Q
    ||||| ||||||||| ||||||||||||| ||||  |||| ||||||||| ||| |||||| | ||||||||||| |||||  ||||| || |||   ||    
T  49018048 gtgttctaacaatcaacatgtttttataccattttttttttacactttcggtttcctagcacccgaggttgttgatcttctacgtaaagttcaaaaggtc 49017949  T
Q  549 atgcataacaatgtcatgtt 568  Q
    |||||||  |||||||||||    
T  49017948 atgcatataaatgtcatgtt 49017929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 439 - 529
Target Start/End: Complemental strand, 26772853 - 26772763
Alignment:
Q  439 atcataaatcgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| ||| |||||| | ||||||| |||| |||||||| |||||||||||||||||| |  || |||||||||||||  |||||||||||    
T  26772853 atcagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttct 26772763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 529
Target Start/End: Original strand, 26856767 - 26856864
Alignment:
Q  432 gtcatatatcataaatcgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| |||| ||||| |||||| | ||||||| |||| |||||||| || |||||||||| |||||||||| ||||||  ||||  ||||||||||||    
T  26856767 gtcaaatatgataaagcgtgttgtgacaatcaacatgcttttataccatctgcttttgacgctttcgatttcctagcactagagactgttgaccttct 26856864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 529
Target Start/End: Original strand, 3443340 - 3443414
Alignment:
Q  455 taacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||||| |||| |||||||| |||| || |||||||||||  ||| ||||||  ||||||||||||||||||    
T  3443340 taacaatcaacatgcttttataccattttctgttgacactttcagtttcctagcactagaggttgttgaccttct 3443414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 7502040 - 7502114
Alignment:
Q  456 aacaatcatcatgttttt-atacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||| ||||||||| |||| |||| ||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  7502040 aacaatcaacatgttttttataccattttcttttgacatttttggtttcctagcaccagaggttgttgaccttct 7502114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 38670901 - 38670982
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| ||||| |||||||||||| |  ||||||||||||||||  | |||||||||    
T  38670901 cgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttggctttctagcatcagaggcggatgaccttct 38670982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 32546872 - 32546800
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||  |||||||| |||||||||||||||||||  ||| |||||| || ||| ||||||||||||    
T  32546872 acaatcaacatacttttataccatttgcttttgacactttcagtttcctagcaccaaaggctgttgaccttct 32546800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 529
Target Start/End: Complemental strand, 44198842 - 44198772
Alignment:
Q  459 aatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||| |||| |||||||| |||||||||||||||||||| |||  || || | |||| ||||||||||||    
T  44198842 aatcaacatgcttttataccatttgcttttgacactttcggtttcttaacacccgaggctgttgaccttct 44198772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 573
Target Start/End: Complemental strand, 4473147 - 4473023
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||| |||| ||||  |||||||||||| ||||| ||||||||||||||  || |||||| ||||  || || |||||||   |||| || ||| |||    
T  4473147 cgtgttctaaccatcaatatgtttttatactatttgtttttgacactttcggcttcctagcaccaga-attcttaaccttctacataaagttcaaagaat 4473049  T
Q  548 catgcataacaatgtcatgtttccta 573  Q
    |||||||| |||| |||||| |||||    
T  4473048 catgcatagcaatttcatgtctccta 4473023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 529
Target Start/End: Original strand, 38978824 - 38978901
Alignment:
Q  452 ttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| |||||||  |||||||||||| ||||| |||||||||||| | ||| |||||| | ||||  |||||||||||    
T  38978824 ttttgacaatcaatatgtttttatactatttgtttttgacacttttggtttcctagcacctgaggccgttgaccttct 38978901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 5338712 - 5338648
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| |||||||| ||||||||||||||||||||  || ||||||  |||| |||||||| ||||    
T  5338712 catgcttttatacaatttgcttttgacactttcggcttcctagcactagagattgttgacattct 5338648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 43123222 - 43123150
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||||| |||||| |||| |  |||||||||| |||||||||||| || || |||||||| ||||    
T  43123222 acaatcaacatgttgttatactatttacgattgacacttttgattttctagcaccatagtttgttgactttct 43123150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 567
Target Start/End: Original strand, 35740016 - 35740126
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataa 556  Q
    ||||||| ||||||||||||| ||| |||||||||||||||  ||| |||||| ||||| |||||||||||||   || | || ||| | ||||||||||    
T  35740016 acaatcaacatgtttttatacaattagcttttgacactttcagtttcctagcaccagagattgttgaccttctacatagagttcaaaaagtcatgcataa 35740115  T
Q  557 caatgtcatgt 567  Q
    |||||||||||    
T  35740116 caatgtcatgt 35740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 567
Target Start/End: Complemental strand, 24125105 - 24124995
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataa 556  Q
    ||||||| |||| |||||||| |||||||||||||| ||| ||||| |||||| |||||||||||| ||||||   |||| || |||   |||||||||     
T  24125105 acaatcaacatgcttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataaagttcaaaaggtcatgcatag 24125006  T
Q  557 caatgtcatgt 567  Q
    |||||||||||    
T  24125005 caatgtcatgt 24124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 3188055 - 3187974
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||| |||||||  || |||||||||||||||||| |||||||    
T  3188055 cgtgttctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttct 3187974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 6592661 - 6592579
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctg 530  Q
    |||||| | ||||||| |||| ||||| || |||||||||||||||||||  ||| |||||  ||||||||||||||||||||    
T  6592661 cgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagctccagaggttgttgaccttctg 6592579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 38815380 - 38815299
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||   || |||||| |||||| ||||||||||||    
T  38815380 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttct 38815299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 573
Target Start/End: Complemental strand, 28196261 - 28196153
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataacaatgtca 564  Q
    ||||||||||||| ||||| |||||||||||| |  || |||||| || |||||||||||| |||  ||| | || |||  |||||||| ||||||||||    
T  28196261 catgtttttataccatttgtttttgacacttttgtcttcctagcaccataggttgttgaccatctacgtagagttcaaaggatcatgcacaacaatgtca 28196162  T
Q  565 tgtttccta 573  Q
    ||| |||||    
T  28196161 tgtctccta 28196153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 37514298 - 37514226
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| ||||  ||||||| ||||||||||||||||||| |||| |||||  |||||| ||||||||||||    
T  37514298 acaatcaacatgcgtttatactatttgcttttgacactttcaatttcctagcgccagaggctgttgaccttct 37514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 4073621 - 4073539
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacacttt--cgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||||| |||||| |||| |||||||| |||||| |||||||||||  | ||||| ||| | |||||||||||||||||||    
T  4073621 cgtgttttaccaatcaacatgattttatacaatttgcatttgacacttttgccatttt-tagtaccagaggttgttgaccttct 4073539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 529
Target Start/End: Original strand, 8540399 - 8540479
Alignment:
Q  449 gtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||| ||||||||  |||||||||||   || ||| |||||||||||| | |||||| ||||||||||||||||| ||||    
T  8540399 gtgttctaacaatcgacatgtttttatgtcatctgcatttgacactttcaactttctaacatcagaggttgttgactttct 8540479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 525
Target Start/End: Original strand, 25021844 - 25021912
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacc 525  Q
    ||||||| ||||||||||||| |||| ||||||||| ||| |  || |||||| |||||||||||||||    
T  25021844 acaatcaacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggttgttgacc 25021912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 516
Target Start/End: Complemental strand, 39434753 - 39434685
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagagg 516  Q
    |||||| | ||||||| |||| |||||||| ||||| |||||||||||| || || |||||||||||||    
T  39434753 cgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttcctagcatcagagg 39434685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 4097370 - 4097445
Alignment:
Q  454 ttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||||| ||| |||||||| ||||| | ||||| | ||| |  |||||||||||||||||||||||| ||||    
T  4097370 ttaacaatcaacatatttttatatgatttacatttgaaatttttgcctttctagcatcagaggttgttgactttct 4097445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 527
Target Start/End: Complemental strand, 6618370 - 6618291
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacctt 527  Q
    |||||| | ||||||| |||| ||||| || |||||||||||||||||||  ||| |||||  ||||| |||||||||||    
T  6618370 cgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagctccagagattgttgacctt 6618291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 525
Target Start/End: Complemental strand, 36004199 - 36004131
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacc 525  Q
    ||||||| ||||||||||||| |||| | ||||||| ||| || || ||| || |||||||||||||||    
T  36004199 acaatcaacatgtttttataccatttacatttgacatttttgacttcctatcaccagaggttgttgacc 36004131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 448 - 573
Target Start/End: Original strand, 45659669 - 45659792
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||||||| ||| || |||||| |||||||||||  | || | || |||  ||    
T  45659669 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctatcaccagaggctgttgaccttc--tatagagttcaaaagat 45659766  T
Q  548 catgcataacaatgtcatgtttccta 573  Q
    |||||||| ||||||||||| |||||    
T  45659767 catgcatagcaatgtcatgtctccta 45659792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 29169814 - 29169895
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||| ||| |||||| ||||||||||| |||||||    
T  29169814 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttct 29169895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 567
Target Start/End: Complemental strand, 2898768 - 2898669
Alignment:
Q  468 gtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataacaatgtcatgt 567  Q
    |||||||||| |||||||||||| ||||||| ||| |||||| |||||||||||||||||||   || | || |||  ||||||||||||||| ||||||    
T  2898768 gtttttataccatttgcttttgatactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaagatcatgcataacaatatcatgt 2898669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 21473089 - 21473008
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||||||| ||||||||||||||||| |  ||| |||||| |||||| ||||||||||||    
T  21473089 cgtgttctgacaatcaacatgtttttataccatttgcttttgacacttgcagtttcctagcaccagaggctgttgaccttct 21473008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 28041157 - 28041229
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| || |||||||||| |||||||||||||||||||| ||| |||||| ||||||  |||||||||||    
T  28041157 acaatcaacaggtttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgaccttct 28041229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 31737353 - 31737425
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||| ||||    
T  31737353 acaatcaacatgcttttataccatttgtttttgacactttcgattttctagcattagaggctattgacattct 31737425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 34644635 - 34644571
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| |||||||| ||||| ||||||||||||||  || ||||||||||||||||||||||||||    
T  34644635 catgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttct 34644571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 20259818 - 20259899
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||||||| ||||  | |||||||||||| |||  ||||| |||||||||||||||||||    
T  20259818 cgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttcttagcaccagaggttgttgaccttct 20259899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 22346981 - 22346900
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||  |||||||  ||||||||||||||||||| ||| |||| | |||||||||||||||||||    
T  22346981 cgtgttctgacaatcaacatgcgtttataccttttgcttttgacactttcggtttcctagtagcagaggttgttgaccttct 22346900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 2764556 - 2764484
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||| | |||| ||||||||||||||   || ||||||||||||||||||||||||||    
T  2764556 acaatcaacatgcttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgaccttct 2764484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 24177541 - 24177613
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| ||| ||||||||| ||||| |||||||| ||||| ||| ||||||||||||| |||| |||||||    
T  24177541 acaatcaacatatttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttct 24177613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 529
Target Start/End: Original strand, 4862032 - 4862091
Alignment:
Q  470 ttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||| |||||||||||||||||||||||| ||| || || | ||||||||||||||    
T  4862032 ttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgttgaccttct 4862091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 529
Target Start/End: Complemental strand, 16500118 - 16500039
Alignment:
Q  450 tgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||| ||||||| | ||||  ||||||| |||||||||||||||||| || || ||||||| ||||| ||||||||||||    
T  16500118 tgttctaacaattaacatgcctttatactatttgcttttgacacttttgacttcctagcattagaggctgttgaccttct 16500039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 516
Target Start/End: Complemental strand, 19035533 - 19035465
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagagg 516  Q
    |||||| | ||||||| |||| |||||||| |||| |||||||||||| || ||| |||||| ||||||    
T  19035533 cgtgttctgacaatcaacatgcttttataccatttacttttgacacttacggtttcctagcaccagagg 19035465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 47459751 - 47459687
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||||||||| |||||||||||| ||||| |  || |||| ||||||||  |||||||||||    
T  47459751 catgtttttataccatttgcttttgatacttttggcttcctagtatcagaggcagttgaccttct 47459687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 33220732 - 33220813
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||| || ||||||| |||| |||||||| ||||||||||||||||||||  || |||||||| |||||||||||||||||    
T  33220732 cgtgtgttgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgaccttct 33220813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 959666 - 959585
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||| ||||||| ||||| |||||||| ||||| ||| |||||| |||||||||||||||||||    
T  959666 cgtgttctgacaatcaacatgtctttataccatttgtttttgacattttcggtttcctagcaccagaggttgttgaccttct 959585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 4165943 - 4166024
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||  ||||||||||||||||||||  || |||||| |||||||||||||||||||    
T  4165943 cgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttct 4166024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 4206617 - 4206698
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||| | |||| |||||||  ||||||||||||||||||||  || |||||| |||||||||||||||||||    
T  4206617 cgtgttctgacaatgaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttct 4206698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 34304582 - 34304501
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||| |  || ||||||||||| | ||||||||||||    
T  34304582 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttgggcttcctagcatcagatgatgttgaccttct 34304501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 17249335 - 17249407
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| |||||||||||||||||| |  || |||||||||||||  |||||||||||    
T  17249335 acaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttct 17249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 45698 - 45779
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||| | ||||| |||||||||||||| |||  ||||| |||||| ||||||||||||    
T  45698 cgtgttctgacaatcaacatgcttttattccatttgtttttgacactttcggtttcttagcaccagaggctgttgaccttct 45779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 29338100 - 29338181
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| ||||||||| |||| | |||||| |||||||||||||||||  || || |||||| ||||| | |||||||||||    
T  29338100 cgtgttctaacaatcaacatgctcttataccatttgcttttgacacttctgacttcctagcaccagagatcgttgaccttct 29338181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 529
Target Start/End: Complemental strand, 28625995 - 28625935
Alignment:
Q  469 tttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||||| ||||| |||| |||||||| |||| |||||| ||||||||||||| |||||    
T  28625995 tttttataccatttgttttttacactttcaatttcctagcaccagaggttgttgagcttct 28625935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 37873659 - 37873740
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||||||| |  || |||||| |||||||||||||||||||    
T  37873659 cgtgttctgacaatcaacatgtttttataccatttgcttttgacacttttggcttcctagcaccagaggttgttgaccttct 37873740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 573
Target Start/End: Original strand, 32269827 - 32269943
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataa 556  Q
    ||||||| || | |||||||| |||||||||||| ||||||||||| ||||||  |||||||||||||||||||  | || || |||   |||||||||     
T  32269827 acaatcaacacgcttttataccatttgcttttgatactttcgatttcctagcactagaggttgttgaccttctgcatgaagttcaaaaggtcatgcatag 32269926  T
Q  557 caatgtcatgtttccta 573  Q
    ||||||||||| |||||    
T  32269927 caatgtcatgtctccta 32269943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 459 - 529
Target Start/End: Original strand, 22188687 - 22188757
Alignment:
Q  459 aatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||| |||| |||||||| ||||| ||||||||||||||||||| ||||| |||||| ||||||||||||    
T  22188687 aatcaacatgattttatactatttgtttttgacactttcgattttttagcaccagaggctgttgaccttct 22188757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 574
Target Start/End: Complemental strand, 42921783 - 42921657
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||| | ||||||| |||| |||||||| |||||||| ||||||||||| ||| |||||| |||||||||||| ||||||   || | || | |   |    
T  42921783 cgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttctacatagagttcagaaggt 42921684  T
Q  548 catgcataacaatgtcatgtttcctaa 574  Q
    |||||||||||||||||||| ||||||    
T  42921683 catgcataacaatgtcatgtctcctaa 42921657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 13166931 - 13167012
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| ||||||||||||||||||||  || ||||||||||||  ||||||||||||    
T  13166931 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatcagagactgttgaccttct 13167012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 529
Target Start/End: Original strand, 25663064 - 25663134
Alignment:
Q  459 aatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||| ||||||||||||| |||||||||||||||||||   || ||||||||||| |||||||| |||||    
T  25663064 aatcaacatgtttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatcttct 25663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 14423764 - 14423687
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||    | ||||||||||||| ||||||||||||    
T  14423764 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttc----tcctagcatcagaggctgttgaccttct 14423687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 34335414 - 34335342
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| ||||| ||||||||||||||| |||||  || |||||| ||||||||||||    
T  34335414 acaatcaacatgcttttataccatttgtttttgacactttcgactttctgacaccagaggctgttgaccttct 34335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 527
Target Start/End: Original strand, 14723274 - 14723344
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacctt 527  Q
    ||||||| |||| |||||||  ||||| |||| ||||||| | |||| |||||||||||||||||||||||    
T  14723274 acaatcaacatgcttttatatcatttgttttttacacttttggttttttagcatcagaggttgttgacctt 14723344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 529
Target Start/End: Complemental strand, 27336783 - 27336698
Alignment:
Q  444 aaatcgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||||||| | ||||||| |||  |||||||| |||||||||||||||||  |  || |||||||||||||  |||||||||||    
T  27336783 aaatcgtgttctgacaatcaacatacttttataccatttgcttttgacacttgtggcttcctagcatcagaggcagttgaccttct 27336698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 33692076 - 33692157
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||| ||| ||||||||||||||||||||  ||  |||||||||||  ||||||||||||    
T  33692076 cgtgttatgacaatcaacatgcttttgtaccatttgcttttgacactttcggcttcttagcatcagagactgttgaccttct 33692157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 43129620 - 43129539
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||| ||| |||||||||||||| ||||| ||| ||| || |||| ||| ||||||||||    
T  43129620 cgtgttctgacaatcaacatgtttttctaccatttgcttttgacattttcggtttcctaacaccagatgtttttgaccttct 43129539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 430679 - 430607
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| |||||||||||||||||| |  ||  ||||||||||||  |||||||||||    
T  430679 acaatcaacatgcttttataccatttgcttttgacacttttgtcttcatagcatcagaggcagttgaccttct 430607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 35310525 - 35310453
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| || |||||||||||||||||  || || |||||||||| |||| |||||||    
T  35310525 acaatcaacatgcttttataccatctgcttttgacactttcggcttcctggcatcagaggctgttaaccttct 35310453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 573
Target Start/End: Complemental strand, 38875715 - 38875599
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataa 556  Q
    ||||||| ||||||||| ||| ||||| |||||||||||||   || |||||| |||||| || |||||||||  ||| | || |||   ||||||||||    
T  38875715 acaatcaacatgtttttgtaccatttgtttttgacactttcagcttcctagcaccagaggctgctgaccttctacgtagagttcaaaaggtcatgcataa 38875616  T
Q  557 caatgtcatgtttccta 573  Q
    ||||||| ||| |||||    
T  38875615 caatgtcttgtctccta 38875599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 527
Target Start/End: Complemental strand, 35456042 - 35455963
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacctt 527  Q
    |||||| ||||||||| |||| ||||||||  ||||||||||||| ||| |  || |||||| |||||| ||||||||||    
T  35456042 cgtgttctaacaatcaacatgcttttataccttttgcttttgacaattttggcttcctagcaccagaggatgttgacctt 35455963  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 522
Target Start/End: Complemental strand, 7716250 - 7716193
Alignment:
Q  466 atgtttttatacgatttgc-ttttgacactttcgattttctagcatcagaggttgttg 522  Q
    |||||| ||||| |||||| |||||||||||| | |||||||||| ||||||||||||    
T  7716250 atgtttctataccatttgcgttttgacacttttggttttctagcaccagaggttgttg 7716193  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 15292047 - 15292128
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||||||| ||||| |||| |||||||   ||||||||||  ||||||| |||| |||||    
T  15292047 cgtgttctgacaatcaacatgtttttatacaatttgttttttacacttttagttttctagcactagaggttattgatcttct 15292128  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 4413087 - 4413168
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  4413087 cgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttct 4413168  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 573
Target Start/End: Complemental strand, 17344724 - 17344599
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||||||  ||| |||||| || ||| ||||||||||||   || | || |||   |    
T  17344724 cgtgttttcacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagcaccataggctgttgaccttctacatagagttcaaaaggt 17344625  T
Q  548 catgcataacaatgtcatgtttccta 573  Q
    |||||||||||||||||||| |||||    
T  17344624 catgcataacaatgtcatgtctccta 17344599  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 28225077 - 28225005
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| ||||||||||||||||||||  || ||||| ||||||||||||||||||||    
T  28225077 acaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttct 28225005  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 527
Target Start/End: Original strand, 20142755 - 20142825
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacctt 527  Q
    ||||||| |||| |||||||| |||| ||||||||||||| | ||||||||||||| ||||||||||||||    
T  20142755 acaatcaacatgcttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgacctt 20142825  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 567
Target Start/End: Original strand, 41867938 - 41868048
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataa 556  Q
    ||||||| |||| |||||||| ||||||||||||||||||||  || |||||| |||||| ||||||||||||   || | || |||   ||||||||||    
T  41867938 acaatcaacatgcttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcataa 41868037  T
Q  557 caatgtcatgt 567  Q
    |||||||||||    
T  41868038 caatgtcatgt 41868048  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 9685436 - 9685517
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||||| ||||||||||||  ||||| ||| ||||||||    
T  9685436 cgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttgattttctagcactagaggctgtggaccttct 9685517  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 573
Target Start/End: Original strand, 18744975 - 18745100
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataat 547  Q
    |||||| | ||||||| |||  |||||||| |||||||||||||| |||||||||||||||| || ||| ||||| ||||||   || | || |||  ||    
T  18744975 cgtgttctgacaatcaacatacttttataccatttgcttttgacattttcgattttctagcaccataggctgttggccttctacatagagttcaaaagat 18745074  T
Q  548 catgcataacaatgtcatgtttccta 573  Q
    |||||||| ||||||||| |||||||    
T  18745075 catgcatagcaatgtcatatttccta 18745100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 503
Target Start/End: Original strand, 19161804 - 19161859
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgatttt 503  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  19161804 cgtgttctgacaatcaacatgtttttataccatttgcttttgacactttcggtttt 19161859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 573
Target Start/End: Complemental strand, 13413406 - 13413312
Alignment:
Q  479 atttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataacaatgtcatgtttccta 573  Q
    ||||| |||||||||||||| ||||| |||| |||||| ||||||||||||   || | || |||   ||||||||||||||||||||| |||||    
T  13413406 atttgtttttgacactttcggttttcaagcagcagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctccta 13413312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 529
Target Start/End: Original strand, 13147142 - 13147202
Alignment:
Q  469 tttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||||| ||||| |||||||||||| | ||||||| || ||||| |||||||||||||    
T  13147142 tttttataccatttgattttgacacttttggttttctaacaccagagattgttgaccttct 13147202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 528
Target Start/End: Complemental strand, 3825795 - 3825732
Alignment:
Q  465 catgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttc 528  Q
    |||||||||||   ||||||||  ||||||||| |||| ||||||||| |||||||||||||||    
T  3825795 catgtttttatttcatttgcttcagacactttcaatttcctagcatcaaaggttgttgaccttc 3825732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 527
Target Start/End: Complemental strand, 29808160 - 29808082
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacctt 527  Q
    |||||| ||||||||| |||||||| |||| |||||||||| ||| | |  |||| |||||||| |||||||||||||||    
T  29808160 cgtgttataacaatcaacatgtttt-ataccatttgcttttcacattatttatttcctagcatcggaggttgttgacctt 29808082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 529
Target Start/End: Complemental strand, 44686492 - 44686421
Alignment:
Q  458 caatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| |||| |||||||   || ||||||||||||||||  || |||||||||||| |||||||||||||    
T  44686492 caatcaacatgcttttatattgttcgcttttgacactttcggcttcctagcatcagagtttgttgaccttct 44686421  T

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Target: scaffold0009 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 103183 - 103111
Alignment:
Q  457 acaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    ||||||| |||| |||||||| |||||||||||||||||||| ||| |||||| |||||| ||||||||||||    
T  103183 acaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttct 103111  T

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Target: scaffold0148 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 33336 - 33255
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| ||||||||||||| |||| ||||||||| ||||| ||| ||| || |||||||||||||||||||    
T  33336 cgtgttctgacaatcaacatgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttct 33255  T

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Target: scaffold1768 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 573
Target Start/End: Original strand, 217 - 330
Alignment:
Q  460 atcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttctgtgtaaaattaaaataatcatgcataacaa 559  Q
    |||| |||| |||||||| |||||  ||||||||||| | |||||||| | || |||||||||||||||||  |||| || ||| | |||| |||| |||    
T  217 atcaacatgcttttataccatttgtgtttgacacttttggttttctagtaccaaaggttgttgaccttctgcataaagttcaaaaagtcatacatagcaa 316  T
Q  560 tgtcatgtttccta 573  Q
    |||||||| |||||    
T  317 tgtcatgtctccta 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 6420 - 6339
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| | ||||||| |||| || ||||| |||||||||||||||||||  ||| |||||| |||||| ||||||||||||    
T  6420 cgtgttctgacaatcaacatgcttctataccatttgcttttgacactttcagtttcctagcaccagaggctgttgaccttct 6339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 529
Target Start/End: Complemental strand, 10436 - 10365
Alignment:
Q  458 caatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgaccttct 529  Q
    |||||| |||| |||||||| |||||||||||||||||  |  || |||||| |||||||||||||||||||    
T  10436 caatcaacatgcttttataccatttgcttttgacacttgtggcttcctagcaccagaggttgttgaccttct 10365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 527
Target Start/End: Complemental strand, 7688 - 7609
Alignment:
Q  448 cgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcgattttctagcatcagaggttgttgacctt 527  Q
    |||||| | ||||||| |||| ||||| || |||||||||||||||||||  ||| |||||  ||||| |||||||||||    
T  7688 cgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagctccagagattgttgacctt 7609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 49501 - 49446
Alignment:
Q  444 aaatcgtgttttaacaatcatcatgtttttatacgatttgcttttgacactttcga 499  Q
    |||||||||| | ||||||| | || |||||||| |||||||||||||||||||||    
T  49501 aaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacactttcga 49446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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