View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6046_low_43 (Length: 260)

Name: NF6046_low_43
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6046_low_43
NF6046_low_43
[»] scaffold2079 (1 HSPs)
scaffold2079 (1-252)||(96-343)
[»] chr7 (2 HSPs)
chr7 (1-201)||(6241962-6242156)
chr7 (219-252)||(6241912-6241945)
[»] chr2 (7 HSPs)
chr2 (131-198)||(15641840-15641907)
chr2 (45-84)||(10850715-10850754)
chr2 (45-84)||(10878229-10878268)
chr2 (134-184)||(15622006-15622057)
chr2 (134-184)||(15643846-15643897)
chr2 (134-184)||(15652896-15652947)
chr2 (131-201)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (45-83)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (131-195)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 343 - 96
Alignment:
Q  1 tatgggcggattcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  343 tatgggcggattcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgcctgcgttccaaaa 244  T
Q  101 tattcttttatattcacnnnnnnnnatcgatgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctac 200  Q
    ||||||||||||||||         ||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  243 tattcttttatattca-ttttttttatccatgttattttgcaagagactatttctttctccaaacttcaaagaggttttcctacaaaattgatttgctac 145  T
Q  201 accgaatggnnnnnnnnnctcttttatcttctactcaacttcttcttcatct 252  Q
    |||| ||           ||||||||||||||||| ||||||||||||||||    
T  144 accggat---ttttttttctcttttatcttctacttaacttcttcttcatct 96  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 6242156 - 6241962
Alignment:
Q  1 tatgggcggattcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaa 100  Q
    ||||| |||||||| ||||||||||||||||||       |||| ||||||||||||| ||| ||||||||||||||||||||||| |  |||| |||||    
T  6242156 tatggacggattcgcggtacgcaatatgagaaa-------cccggttaagtatagtagactaacttaatattgcaaaaaagtagtgcccacgtttcaaaa 6242064  T
Q  101 tattcttttatattcacnnnnnnnn-atcgatgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgcta 199  Q
    |||||||||| ||||||         |||| | ||||||||||||||||||||||||||||| | |||||||||||||||| || |||||||||||||||    
T  6242063 tattcttttacattcactttttttttatcgttattattttgcaagagactatctctttctccaaacttcaaagaggttttcttaaaaaattgatttgcta 6241964  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 6241945 - 6241912
Alignment:
Q  219 ctcttttatcttctactcaacttcttcttcatct 252  Q
    ||||||||||||||||| ||||||||||||||||    
T  6241945 ctcttttatcttctacttaacttcttcttcatct 6241912  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 15641907 - 15641840
Alignment:
Q  131 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgct 198  Q
    |||||||||||||||| |  |||||| |||| ||||||||||| ||||||||||| |||| |||||||    
T  15641907 tgttattttgcaagaggcgttctcttcctccaagcttcaaagatgttttcctacagaatttatttgct 15641840  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 10850715 - 10850754
Alignment:
Q  45 attaagtatagtaggctatcttaatattgcaaaaaagtag 84  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10850715 attaagtatagtaagctatcttaatattgcaaaaaggtag 10850754  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 10878229 - 10878268
Alignment:
Q  45 attaagtatagtaggctatcttaatattgcaaaaaagtag 84  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10878229 attaagtatagtaagctatcttaatattgcaaaaaggtag 10878268  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 15622057 - 15622006
Alignment:
Q  134 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 184  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15622057 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15622006  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 15643897 - 15643846
Alignment:
Q  134 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 184  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15643897 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15643846  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 15652947 - 15652896
Alignment:
Q  134 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 184  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15652947 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15652896  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 43724873 - 43724943
Alignment:
Q  131 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctaca 201  Q
    ||||||||||||||||||  ||||||||||| | ||| ||| |||||||||  ||||| | ||||||||||    
T  43724873 tgttattttgcaagagacgttctctttctccaaactttaaataggttttcccgcaaaaattatttgctaca 43724943  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 16724148 - 16724110
Alignment:
Q  45 attaagtatagtaggctatcttaatattgcaaaaaagta 83  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  16724148 attaagtatagtaaactatcttaatattgcaaaaaagta 16724110  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 10682669 - 10682732
Alignment:
Q  131 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgattt 195  Q
    ||||||||||||||| |   ||||||||||| |||||||||||| |||| |||||||||| ||||    
T  10682669 tgttattttgcaagacatgttctctttctccaagcttcaaagagatttt-ctacaaaatttattt 10682732  T

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