View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_45 (Length: 254)
Name: NF6046_low_45
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_45 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 443 - 567
Alignment:
| Q |
111 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaannnnnnnngttcgttggacaagaaagttcaatcgagtatagtgtaaaacgaattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
443 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaattgtttttgctcgttggacaagaaagttcaatcgagtatagtataaaacgaattc |
542 |
T |
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| Q |
211 |
gtattaaacgtttttatgggtcact |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
543 |
gtattaaacgtttttatgggtcact |
567 |
T |
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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 6242256 - 6242384
Alignment:
| Q |
111 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaannnnnnnngttcgttggacaagaaagttcaatcgag---tatagtgtaaaacgaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||| |
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| T |
6242256 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaattttctttgctcgttggacaagaaatttcaatcgagaactatagtataaaacgaa |
6242355 |
T |
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| Q |
208 |
ttcgtattaaacgttttt-atgggtcact |
235 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
6242356 |
ttcgtattaaacgtttttaatgggtcact |
6242384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 6330676 - 6330641
Alignment:
| Q |
199 |
taaaacgaattcgtattaaacgtttttatgggtcact |
235 |
Q |
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| T |
6330676 |
taaaacgaattcgtattaaacg-ttttatgggtcact |
6330641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 6347154 - 6347119
Alignment:
| Q |
199 |
taaaacgaattcgtattaaacgtttttatgggtcact |
235 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
6347154 |
taaaacgaattcgtattaaacg-ttttatgggtcact |
6347119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 36807309 - 36807230
Alignment:
| Q |
30 |
tgtaaaggctatatattagccattttgctttaataaaggatattcagttttgcaaacct--gtctcacgctctatctcct |
107 |
Q |
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|||||| | ||||||||||||| ||||||||||||||| ||| |||||| |||||||| || ||||| |||||||||| |
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| T |
36807309 |
tgtaaatgttatatattagccactttgctttaataaagaatacccagtttcgcaaacctgagtgtcacgatctatctcct |
36807230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 121 - 162
Alignment:
| Q |
194 |
tagtgtaaaacgaattcgtattaaacgtttttatgggtcactt |
236 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
121 |
tagtataaaacgaattcgtattaaacg-ttttatgggtcactt |
162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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