View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6046_low_5 (Length: 582)
Name: NF6046_low_5
Description: NF6046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6046_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 28219037 - 28219491
Alignment:
| Q |
19 |
ctatattgggtataaattcctgtttggcctggctgtatcccaatatcttctattaggatactgttttctgataatttctagacattttatgtttatgtga |
118 |
Q |
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| T |
28219037 |
ctatattgggtataaattcctgtttggcctggctgtatcccaatatcttctattaggatactgttttctgataatttctagacattttatgtttatgcga |
28219136 |
T |
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| Q |
119 |
atcttgatattgtgatttgtaacattgcagcttttagaagagcttaataatgaaggcttgagagccgatgttaatggtggtatgtaattttatacttgaa |
218 |
Q |
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| T |
28219137 |
atcttgatattgtgatttgtaacattgcagcttttagaagagcttaataatgaaggcttgagagccgatgttaatggtggtatgtaattttatacttgaa |
28219236 |
T |
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| Q |
219 |
caatcccgttttatacttgtcgttaaaagtgattttgataaattgtttggtaacagagtggagtggaacttcccttggaaactccgttacgcttttcaga |
318 |
Q |
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| T |
28219237 |
caatcccgttttatatttgtcgttaaaagtgattttaataaattgtttggtagcagagaggagtggaacttcccttggaaactccgttacgcttttcaga |
28219336 |
T |
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| Q |
319 |
tcatcgttcttagaacctttacaaaaagccagcaaggtatgaaacattttaaaattgtttctatagtaaattatgatcaaacagattttattttatttta |
418 |
Q |
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| T |
28219337 |
tcatcgttcttagaacctttacaaaaaggcagcaaggtatgaaacatttcaaaattgtttctatagtaaattctgatcaaacagattttattttatttta |
28219436 |
T |
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| Q |
419 |
tatgagaatgctaaaaaccgcgattcctttgcttttcatttaaaccagcacaaat |
473 |
Q |
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| T |
28219437 |
tgtgagaatgctaaaaaccgcgattcctttgtttttcatttaaacatgcacaaat |
28219491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 488 - 576
Target Start/End: Original strand, 28219586 - 28219674
Alignment:
| Q |
488 |
atttttagtgtccattaacctaattatgttgatgctgctattgttaataatttgataatactaacataaatgagattcagtattatcta |
576 |
Q |
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| T |
28219586 |
atttttagtgtccattaacctaattatgttgatgctgctattgttaataatttgataatactaacataaatgagattcagtagtatcta |
28219674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 235 - 461
Target Start/End: Complemental strand, 27947252 - 27947031
Alignment:
| Q |
235 |
ttgtcgttaaaagtgattttgataaattgtttggtaacagagtggagtggaacttcccttggaaactccgttacgcttttcagatcatcgttcttagaac |
334 |
Q |
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| T |
27947252 |
ttgtcattaaaattgattttgatacattgtttcgtagcagaatggcgtggaacttcccttcgaaactctgttacacttttcagatcgtcgttcttagaat |
27947153 |
T |
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| Q |
335 |
ctttacaaaaagccagcaaggtatgaaacattttaaaattgtttctatagtaaattatgatcaaacagattttattttattttatatgagaatgctaaaa |
434 |
Q |
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| T |
27947152 |
ctttgcaaaaagcctgcaaggtatgaaacatttttaaattgtttctgtagtaaattttgatcgaacag-----aaataattttatgtgagaatgctaaaa |
27947058 |
T |
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| Q |
435 |
accgcgattcctttgcttttcatttaa |
461 |
Q |
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| T |
27947057 |
attgtgattcctttgtttctcatttaa |
27947031 |
T |
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